Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0530 ATGCCTGCAGGCGGTGGTAGTAGTCTGATTCCATTCTTCATAATGATTCTGATTCAATTGGCCTATGCAGTCATGAACATTACTTCAAAGCTTGCTATACAATCTGGCATGAACCCTCTCATTCTAGTTGCTTATCGTCAAATCTTTGCAACTATCTCCATCATTCCCTTCGCTTATTTCTTCGAATGGAAAATTCTTCCCAGGATGACAAAGCGCATTATGGTGCAGATATTCCTATCTTCTTTAACAGGAGTTACTGGAAACCAGGTTCTGTATTTCGTTGGGCTAAAATATTCAACCGCTACAATTGCATGTGCACTCACCAATTTGCTCCCAGCTTTCACTTTTGTTCTTGCACTCATCTTCAGACAAGAGAATTTGAGGATCAAGAAAATGTCAGGGCAAACAAAAGTGTTAGGGACAGTTTTGTGTGTGAGTGGAGCCCTGCTATTATCATTTTACCATGGAAAAACCATTGGTTTAGGCGAATCAAGCATTCATTGGAGTTATGCTGACAAAATGCAAGGAGGGTCATCTACCTCCTCCGCCGCCGGAAAAACTAACTTGCTTCTAGGCCCTATCGCCTTGATTTTAAGCGCGCTTGTTTGGGCATTCTGGTTCATAATTCAAGCAGACATGAGCAAGAATTTTCCAGTTCCTTATACAAGCACAGGATACATGTGTTTCTTAGCAAGCTTTCAGTGTGTGATCATTGCCCTGTGTTTTGAACACAGGCCCTCAGCTTGGTCACTCCAAAATGCAATGAGACTTACCTCCTCTCTTTATGCTGGAGTAATTTGCACTGGCCTATCATATTGTGTGATTTCATGGACCATTGAAAGGAAAGGTCCTCTTTATGTCTCTGTATTCACCCCCATGCAGCTTGTCCTCACCGCAATTATAAGCTGGTCTTTGCTTCAGGAGAAATTATACGTCGGAACTGCCATTGGGTCTCTCCTCATAGTTGGTGGGCTCTATGCTGTTTTGTGGGGAAAGAGCAAAGAGGTGGTTAAGAAAGACTCCACTGAAGAGCCAGACATGGAAAAAATGCAGGACAATGAAAAGAATGACCTGGAATTACAACCCTACTTGCCATCCAATGGTAACCATAACGTTGTTACTTAA 1125 0.4249 MPAGGGSSLIPFFIMILIQLAYAVMNITSKLAIQSGMNPLILVAYRQIFATISIIPFAYFFEWKILPRMTKRIMVQIFLSSLTGVTGNQVLYFVGLKYSTATIACALTNLLPAFTFVLALIFRQENLRIKKMSGQTKVLGTVLCVSGALLLSFYHGKTIGLGESSIHWSYADKMQGGSSTSSAAGKTNLLLGPIALILSALVWAFWFIIQADMSKNFPVPYTSTGYMCFLASFQCVIIALCFEHRPSAWSLQNAMRLTSSLYAGVICTGLSYCVISWTIERKGPLYVSVFTPMQLVLTAIISWSLLQEKLYVGTAIGSLLIVGGLYAVLWGKSKEVVKKDSTEEPDMEKMQDNEKNDLELQPYLPSNGNHNVVT* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0530 374 MobiDBLite consensus disorder prediction 360 374 - -
Lja1g0530 374 PANTHER WAT1-RELATED PROTEIN 11 361 IPR030184 GO:0016021|GO:0022857
Lja1g0530 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 227 333 - -
Lja1g0530 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 45 154 - -
Lja1g0530 374 MobiDBLite consensus disorder prediction 340 374 - -
Lja1g0530 374 PANTHER WAT1-RELATED PROTEIN 11 361 - -
Lja1g0530 374 Pfam EamA-like transporter family 12 152 IPR000620 GO:0016020|GO:0016021
Lja1g0530 374 Pfam EamA-like transporter family 191 329 IPR000620 GO:0016020|GO:0016021
Lja1g0530 374 MobiDBLite consensus disorder prediction 340 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0530 Lja-Chr1 4862317 4865484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0530 7 369 Nodulin-like Gene Family AT1G09380 55.738 6.88e-144 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0530 - - gmx:100801512 555.058