Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0524 ATGGCGGCTTCGGTTGGCGTGGCGCCGCATTCAAGCTTGAGAGAATCCAGTGGTATTGCTGTTGATAGATTACCAGAGGAGATGAATGATATGAGAATTAGGGATGATAAAGAAATGGAAGCTACCGTTGTTGAAGGTAATGGAACCGAGACAGGCCATATCATTGTAACCACTATTGGGGATGGAAATGATCAGTCAAAGCAGACTATAAGCTATATGGCAGAGCGAGTAATAGGGCATGGGTCATTTGGGGTTGTCTTCCAGGCTAAATGCTTGGAGACTGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGACAAGAGGTATAAGAACCGAGAACTGCAGACGATGCGTCTTCTTGACCATCCAAATGTTGTCTCTTTGAAGCATTGCTTCTTTTCAACCACTGAAAAGGATGAACTATACCTTAACTTGGTACTTGAGTATGTTCCTGAAACTATTCATCGAGTGATCAAGCAGTACAACAAGTTGAACCAACGCATGCCACTGATATATGTGAAACTCTATACATACCAGATCTTTAGGGCACTATCTTACATTCATGGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATATATTAGTTAATCCGCATACCCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAAGTCTTGGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATATTATAGAGCACCTGAACTTATATTTGGAGCAACTGAATATACTACAGCTATTGACACTTGGTCTGTAGGTTGTGTATTGGCTGAGCTTCTGCTTGGACAGCCTCTGTTCCCCGGTGAAAGTGGAGTTGATCAGCTTGTGGAGATCATCAAGGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAACTATACAGAATTTAAATTCCCACAAATTAAAGCACATCCATGGCACAAGATATTTCCTAAGCGCATGCCACCCGAAGCTGTTGATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTTTAGACGCCTTGACCCATCCCTTCTTTGATGAACTTCGTGACTCAAATACTCGCTTGCCAAGTGGTCGTTTCCTTCCGCCTTTATTCAATTTCAAACCTCATGAACTGAAGGGAGTCCCAATTGAGATTTTGGTGAAATTGATCCCAGAGCATGCCAGGAAGCAGTGCCTGTTCCTTGGGTTGTGA 1227 0.4271 MAASVGVAPHSSLRESSGIAVDRLPEEMNDMRIRDDKEMEATVVEGNGTETGHIIVTTIGDGNDQSKQTISYMAERVIGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETIHRVIKQYNKLNQRMPLIYVKLYTYQIFRALSYIHGCIGVCHRDIKPQNILVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDTWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFPKRMPPEAVDLVSRLLQYSPNLRCTALDALTHPFFDELRDSNTRLPSGRFLPPLFNFKPHELKGVPIEILVKLIPEHARKQCLFLGL* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0524 408 ProSiteProfiles Protein kinase domain profile. 72 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0524 408 Gene3D Transferase(Phosphotransferase) domain 1 152 400 - -
Lja1g0524 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Lja1g0524 408 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 3 406 - -
Lja1g0524 408 SUPERFAMILY Protein kinase-like (PK-like) 71 382 IPR011009 -
Lja1g0524 408 CDD STKc_GSK3 67 359 IPR039192 -
Lja1g0524 408 Gene3D Phosphorylase Kinase; domain 1 56 151 - -
Lja1g0524 408 Pfam Protein kinase domain 72 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0524 408 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 3 406 - -
Lja1g0524 408 ProSitePatterns Protein kinases ATP-binding region signature. 78 102 IPR017441 GO:0005524
Lja1g0524 408 SMART serkin_6 72 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0524 Lja-Chr1 4765900 4770160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0524 72 392 MAP Kinase Gene Family AT1G73670 37.202 3.32e-57 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lja1g0524 Pkinase 2.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0524 K00924 - gmx:100795659 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0524 1 4765900 4770160 Lja5g1348 5 13527259 13531517 ECH
Lja1g0524 1 4765900 4770160 Lja1g0524 1 4765900 4770160 ECH