Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0518 ATGGGTTCTAGTCTTAATGCTGAATTATTGAAGAAAACTCCAATTTGGGGTCTTAAGGTTTGGGAAATAATTGCAATTGCAGTTGGATTGACCATTATTGTCATCCTCTCTGGGTTCTCACTTTGCCTCACTTCAAGGAAGAAATCTAGAAAAGACAATAAGGACAACAAGATTCCTCTTAGTCAGATACCATCTGTGTCAAAGGAAATCAAGGAGGTGCGGGTCGAGCACGTTCCGACAAATGGATTTGCTCCTCGTGATGGAATATTGCTTACCATTCATGATAAATCCAGTGATAAGGAATCAGACAAAGTCATGGTTCATTTGGGTTTGGGGGGGAAGATGAAGAATGGGGATAGTAGTGGTCATTCAGGTTCATTTCATCATAGTATAGAGAAAGATGGAGGTGGGTCACTCTCACAATCAGGAGAAGAAGGTAGCTCTGGCTCAGTTACTGTGTACAAGCACTCTTCATATCCTATAACAGCTCCTTCGCCTTTGAATGGCCTTCCAGAATTCTCTCACTTGGGTTGGGGTCACTGGTTCACCTTGAGGGATCTTGAGCTTGCTACAGGCCGTTTTACAAAAGACAATGTCCTTGGTGAAGGTGGATATGGAGTTGTTTACAAGGGACAATTGATCAATGGGACTCCAGTGGCAGTTAAAAAGATACTCAATAATATTGGTCAAGCAGAGAAGGAATTCAGAGTGGAAGTTGAAGCTATTGGCCATGTTAGACACAAAAATTTGGTTCGCCTTTTGGGGTACTGTGTTGAAGGAACTCATAGGATGTTAGTGTATGAGTATGTCAATAATGGAAACTTGGAGCAATGGCTTCATGGAGCTATGCGTCACCACGGATATCTTACCTGGGAAGCGCGTATCAAGATTCTCCTTGGTACAGCCAAAGCGCTTGCATATTTGCATGAAGCAATTGAGCCAAAGGTGGTACACAGAGATATCAAGTCAAGCAATATATTAATTGATGATGATTTCAATGCTAAGGTTTCTGATTTTGGCCTGGCTAAGTTATTGGGTGCTGGGAAGAGTCATGTGACAACGCGAGTTATGGGAACCTTTGGATACGTCGCTCCTGAATATGCAAATACTGGCCTTCTAAATGAAAAGAGTGATGTTTATAGCTTTGGTGTTTTGCTATTGGAAGGAATAACTGGGAGAGATCCAGTTGACTATGGTCGTCCAACCAATGAAGTGAATCTGGTTGATTGGCTGAAGATGATGGTTGGAAGCAGGAGGTCAGAAGAAGTGGTGGACCCAAACATTGAGGTGAAGCCATCAACTAGAGCTTTAAAACGGGCTCTCTTAACTGCTTTAAGATGTGTAGATCCAGATTCTGAGAAAAGGCCCAAGATGAGCCAAGTTGTGCGTATGCTGGAGTCAGAGGAATATCCTTTACCAAGAGAGGATAGAAGGCACCGAAGAAGAAATCAAGGAGGAAGTGCAGAAATTGAATCACAGAGGGAATTTTCTGACACAGACAGGAGTGAAATTCAGAGTTCTAGAGAAGAGAGCGCAGTGTAA 1542 0.4267 MGSSLNAELLKKTPIWGLKVWEIIAIAVGLTIIVILSGFSLCLTSRKKSRKDNKDNKIPLSQIPSVSKEIKEVRVEHVPTNGFAPRDGILLTIHDKSSDKESDKVMVHLGLGGKMKNGDSSGHSGSFHHSIEKDGGGSLSQSGEEGSSGSVTVYKHSSYPITAPSPLNGLPEFSHLGWGHWFTLRDLELATGRFTKDNVLGEGGYGVVYKGQLINGTPVAVKKILNNIGQAEKEFRVEVEAIGHVRHKNLVRLLGYCVEGTHRMLVYEYVNNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVLLLEGITGRDPVDYGRPTNEVNLVDWLKMMVGSRRSEEVVDPNIEVKPSTRALKRALLTALRCVDPDSEKRPKMSQVVRMLESEEYPLPREDRRHRRRNQGGSAEIESQREFSDTDRSEIQSSREESAV* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0518 513 MobiDBLite consensus disorder prediction 135 151 - -
Lja1g0518 513 MobiDBLite consensus disorder prediction 452 513 - -
Lja1g0518 513 ProSitePatterns Protein kinases ATP-binding region signature. 200 223 IPR017441 GO:0005524
Lja1g0518 513 SUPERFAMILY Protein kinase-like (PK-like) 178 473 IPR011009 -
Lja1g0518 513 Pfam Protein kinase domain 194 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0518 513 CDD STKc_IRAK 200 466 - -
Lja1g0518 513 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 3 510 - -
Lja1g0518 513 Gene3D Phosphorylase Kinase; domain 1 176 269 - -
Lja1g0518 513 PANTHER OS01G0323000 PROTEIN 3 510 - -
Lja1g0518 513 MobiDBLite consensus disorder prediction 116 151 - -
Lja1g0518 513 Gene3D Transferase(Phosphotransferase) domain 1 270 480 - -
Lja1g0518 513 SMART serkin_6 194 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0518 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672|GO:0006468
Lja1g0518 513 ProSiteProfiles Protein kinase domain profile. 194 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0518 Lja-Chr1 4704619 4710213 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0518 171 468 Trihelix Transcription Factor Family AT1G70460 50.165 6.76e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Lja1g0518 Pkinase 5.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0518 - - gmx:100787014 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0518 1 4704619 4710213 Lja1g0518 1 4704619 4710213 ECH