Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0514 ATGAATGTTCTGGGTTGTGCAACAGGCTATGATGAAGTGGATGATGATGATGGTGAATCAAAAGAGAGGGAGGAGCTGGTTTTAAACATAGTGACCATGGTGATCTCCATGGGTATGATCGCATTGATAACTATAGCTGTCGTTGCCAATTTAGACGGTTCTCGACAAGGTGCAGGGACCATGAAAACCCTCTTGTATGTCTGCAAAAAAACAGATGAACCAGATAGCTGTGTCCGCCACTTGAAGCATGTTGGAGAGAGAGCTCCGATTTTGGATTACGTGAAAGCTGCGATCAATGCAACCCTCGATGAATTGCAGGTGGTGAACATGCCAAAACTTGATCTCGAAACGAACCTCACGCCTCTGCAGGCCCAGGCATATGGAGATTGTTTGCAATTGTTGACTTTGGCAAAGGAAGAACTAGATTCCTTGTACACCACGTTGTCAATGCTTCCTTTTACGAACCCACAAGATGTTCTCAACAGCCTCAGTGCTGTGATTTCATACCAACAAGCTTGCTCTGCTGGGTTGATGAGAACAAACAGCTATGAGCTTTTGGGATTTTCATTAAAAAGGCCCATTCGGCTTACAAGGATAGCCTTAGCCATTGTTGACAATTTCTCTTATTCTGGTTCTGAGAAGCATAGTACCGATGATCACGATCACGATCACGAACATCAACTAGATGGAAGTTCAGCCTGGTTCTCAGGAGCACAGCGCAAAATGATGGAGTATCAAAGAAATGGTGATGATGAGGTGATAGATGCTGTTGTGGCTCAAGATGGAAGTGGCCATTTCTCAACCATAAGTGAGTCACTCAATGCTTGCCCAAAGAATAGTGAGGGTGTGGGTAAGGCTGAGAGTCCATGTGTTATTTATGTGAAAACAGGTAAATATGAGGAGAGAGTGGTGGTTCCTAAGGATGTAGGCCAAGTGATCATGTATGGTGATGGACCTATGAATACAACTGTGACTGGAATCAGCACAAGAGACCACAAGATATCGACAACCCACTTCAGAGCAGCTACTTTTGTGGTAATGGGGAAAGAATTCATCTGCAAAAACATGGGTTTCACTGCTCCAGTTAATATCACAGGAGCACCAGCACTACTTGTCCTTTCTGATCATGCAGCATTCTTCAACTGCAAAATAGATGGTGAGGAAGGTAGCTTGCATGCTATGGCGCAACGCCAGTTCTACCGTGACTGCGAGATTCATGGCAACGTGGACATCATCAAGGGAGACTCTGCAACTGTGATTCAGAACTCACAAATCATTGTCAAGCCTCGAAACTCTCTTGATCTGGTTTTGAGGAGAAATATGGTGAGTGCTCAATCCAGATCAGACAAGTATGAGACAACTGGGCTTGTCATCCAAAACTGCACCATCGCAACAGCACAAGCTGAAAGTGGTAATAAAAGTCTTGCAGGTTCTACTTACTTGGGCACCCCACATACTGAGTACTCGAGAACCATCATTATGGAATCATTTCTAGGAGATGTGATACATCCTGAAGGTTGGTGTAAATGGAGTGACAACTATGGGATTGATACAGCAACATTCCGAGAGTATAATAACAGAGGACCAGGGGCAAATACTACAAAGAGGGTCAGGTGGAATACCTACAAAACAGTTTATGAGAGAAACCAAATGAAGAGTTTCTTAGCTGCTGAGTTTATTATTCAATCTGGCCAGTGGTTGCAAAATGCAGGCATTCCCTATGAATCTGGGTTTATTTACAAAAAATAG 1749 0.4374 MNVLGCATGYDEVDDDDGESKEREELVLNIVTMVISMGMIALITIAVVANLDGSRQGAGTMKTLLYVCKKTDEPDSCVRHLKHVGERAPILDYVKAAINATLDELQVVNMPKLDLETNLTPLQAQAYGDCLQLLTLAKEELDSLYTTLSMLPFTNPQDVLNSLSAVISYQQACSAGLMRTNSYELLGFSLKRPIRLTRIALAIVDNFSYSGSEKHSTDDHDHDHEHQLDGSSAWFSGAQRKMMEYQRNGDDEVIDAVVAQDGSGHFSTISESLNACPKNSEGVGKAESPCVIYVKTGKYEERVVVPKDVGQVIMYGDGPMNTTVTGISTRDHKISTTHFRAATFVVMGKEFICKNMGFTAPVNITGAPALLVLSDHAAFFNCKIDGEEGSLHAMAQRQFYRDCEIHGNVDIIKGDSATVIQNSQIIVKPRNSLDLVLRRNMVSAQSRSDKYETTGLVIQNCTIATAQAESGNKSLAGSTYLGTPHTEYSRTIIMESFLGDVIHPEGWCKWSDNYGIDTATFREYNNRGPGANTTKRVRWNTYKTVYERNQMKSFLAAEFIIQSGQWLQNAGIPYESGFIYKK* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0514 582 Pfam Plant invertase/pectin methylesterase inhibitor 67 203 IPR006501 GO:0004857
Lja1g0514 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 62 207 IPR035513 -
Lja1g0514 582 Gene3D - 253 580 IPR012334 -
Lja1g0514 582 SUPERFAMILY Pectin lyase-like 255 576 IPR011050 -
Lja1g0514 582 PANTHER PECTINESTERASE 17 579 - -
Lja1g0514 582 SMART PMEI_2 59 203 IPR006501 GO:0004857
Lja1g0514 582 CDD PMEI-like_3 67 208 - -
Lja1g0514 582 Pfam Pectinesterase 255 560 IPR000070 GO:0030599|GO:0042545
Lja1g0514 582 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 17 579 - -
Lja1g0514 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 207 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0514 Lja-Chr1 4651839 4654100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0514 17 579 Carbohydrate Esterase AT3G05610 32.586 6.66e-86 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0514 K01051 - gmx:102665007 702.205