Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0510 ATGGATTATCGAAGGAGCAGTGGTAGGCAGGAAAGTGGGGGCCGTGGCCGGAGACAATTTAAAAAGGAAGAGGCTCATCAGGACTCCCTTATTGGGGATTTGGCAGAGGATTTTCGTTTGCCAATCAACCACAGGCCAACAGAAAATGTTGATCTGGAGAATGTAGAACAAGCATCTCTGGACACACAGTTAACATCGTCTAATATTGGCTTTAAGCTTCTCCAAAAGATGGGATGGAAAGGAAAGGGTCTTGGGAAGGATGAACAAGGAATCATTGAACCAATCAAATCTGGTATGAGAGATCCAAGACTGGGGCTTGGTAAACAAGAAGAGGATGACTTTTTCACTGCAGAAGAAAACATCCAGCGAAAAAAACTTGATGTCGAGCTGGAGGAGACAGAGGAAAATGTGAGAAAGCGGGAGGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAGGTGAAAGAAATCCGAAAGGTGTTCTATTGTGATCTCTGCAACAAGCAATACAAATTGGCAATGGAGTTTGAAGCACATTTGAGCTCTTACGATCACAATCACAGAAAGAGATTCAAACAAATGAAGGAAATGCATGGTGGTAGTAGTCGGGACGATAGGCAAAAGCGAGAGCAACAGCGTCAAGAGAGAGAAATTGCTAAGTTCGCTCAAATTGCTGATGCTCAAAAGCAGCAACGGCTTCAACTGCTGCAAGAGTCTGGATCAGAACCAGTTTCCTCTGAAACTAGAACTGCTACTCCACTTACAGATCAGGAGCAGCGAAATGCTTTGAAGTTCGGGTTTTCTTCTAAAGGAAGTGCTTCCAAGAATGTGATTGGTCCCAAGAGGCAAATGGTTGCAAAGAAGCAGAATATTCCAGTGTCCTCTATATTCAATAACGATAGTGACGAAGAGTAA 915 0.4339 MDYRRSSGRQESGGRGRRQFKKEEAHQDSLIGDLAEDFRLPINHRPTENVDLENVEQASLDTQLTSSNIGFKLLQKMGWKGKGLGKDEQGIIEPIKSGMRDPRLGLGKQEEDDFFTAEENIQRKKLDVELEETEENVRKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGGSSRDDRQKREQQRQEREIAKFAQIADAQKQQRLQLLQESGSEPVSSETRTATPLTDQEQRNALKFGFSSKGSASKNVIGPKRQMVAKKQNIPVSSIFNNDSDEE* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0510 304 MobiDBLite consensus disorder prediction 1 35 - -
Lja1g0510 304 ProSitePatterns Zinc finger C2H2 type domain signature. 163 185 IPR013087 -
Lja1g0510 304 Pfam Zinc-finger double-stranded RNA-binding 161 188 IPR022755 -
Lja1g0510 304 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 304 - -
Lja1g0510 304 MobiDBLite consensus disorder prediction 237 259 - -
Lja1g0510 304 SUPERFAMILY beta-beta-alpha zinc fingers 141 196 IPR036236 -
Lja1g0510 304 Coils Coil 116 143 - -
Lja1g0510 304 MobiDBLite consensus disorder prediction 194 216 - -
Lja1g0510 304 Pfam G-patch domain 67 107 IPR000467 GO:0003676
Lja1g0510 304 SMART G-patch_5 64 109 IPR000467 GO:0003676
Lja1g0510 304 ProSiteProfiles G-patch domain profile. 66 111 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0510 Lja-Chr1 4608610 4612276 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0510 1 304 C2H2 Transcription Factor Family AT5G26610 63.844 4.63e-126 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0510 - - gmx:100785068 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0510 1 4608610 4612276 Lja1g0510 1 4608610 4612276 ECH