Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0507 ATGGCTAGCGAAGGCACACTCAACTTCATTGACATCCTCCTCGCCATCCTCCTCCCTCCTCTCGGGGTCTTCCTCAAGTTTGGCTGCCATGTTGAGTTCTGGATCTGTTTGGTTCTCACCCTTTTTGGCTATATTCCTGGAATCATCTATGCTGTCTATGCCATCACCAAGTGA 174 0.4943 MASEGTLNFIDILLAILLPPLGVFLKFGCHVEFWICLVLTLFGYIPGIIYAVYAITK* 58
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0507 57 PANTHER LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN 1 57 - -
Lja1g0507 57 ProSitePatterns Uncharacterized protein family UPF0057 signature. 13 28 IPR000612 GO:0016021
Lja1g0507 57 Pfam Proteolipid membrane potential modulator 9 55 IPR000612 GO:0016021
Lja1g0507 57 PANTHER HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED 1 57 IPR000612 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0507 Lja-Chr1 4582643 4584164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0507 5 57 RCI2 Gene Family AT3G05880 77.358 8.96e-26 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0507 - - fve:101314865 101.679