Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0505 ATGGGAAGACACTCTTGCTGTTACAAGCAGAAGCTTCGGAAAGGACTCTGGTCTCCAGATGAAGATGAAAAGCTTTTGAATTACATCACACAACATGGCCATGGTTGTTGGAGTTCAGTTCCAAAGCTAGCTGGTTTGCAGAGGTGTGGGAAGAGTTGCAGATTGAGGTGGATAAATTACCTTAGACCGGATTTGAAGAGGGGAGCATTCTCACAGCAGGAAGAGGATTCAATAATTGAACTTCATGCAGTACTTGGCAACAGGTGGTCTCAGATTGCAGCTCAGTTACCAGGAAGAACTGACAATGAGATAAAGAATTTATGGAATTCCAGTCTGAAGAAGAAACTGAGGCAAAGAGGCATTGACCCAAACACCCACCAACCACTCTGTGAGGTTGAGATCATCAAGGACAAAGATTACAAGGAACCCACACCTGACAACAAAACCATTCATAAAGCCTCAGTGGGCTCCAATCATGAAATGATTAATAGTCTCATTGATCCACCAAAACAAAAGGCAACAACTTCTATCTCCATAGAGAGATACCACCCTCTTCAAATGTCTTCAACCTCCAACAACATCATCAACAATAACACCACCAGCACTCAGGAATTATTCCAAGACAAGTTTGGTACTACTTGTCATGATCAGGGATATTTCTCTTTCTATGGATCACCAAACATGGGAAACATTCCTTCATCATTTTGCTTCATCCCAGGTTCTTCCACTTCAGACCTCAATAATTCTAGTACTATAAACTTTTCCATGCTCAACTCTGTGTCAACCTCAATTTTGCCAAAACATGTCAAGTCAAATAACCCTTCCATATCCTCTGATAGCAGCAGCATAACCCAATTGCAGAACAGCACTAACTTCTATGATGCTCAATCTCATCATCATGTACCTTTACAAGCAGAATTGCAGCAAGAAGGAATTAAATGGTCTGAATATCTCAACACCCCTTTATTTCTGGGAAATGCAGCAGTCAAGAATCAGAGTACCACCACCACCACCACCACTCAATCTATCTACAGTAGTGATGAGGTTATTAAACCTGCAGAACCATCAGGGTTCATCACAGATGAATCTAGCACTACTTGGCATCAGCATCATTTTCAACCTTTGGACTTATATACCAAAGATATGCAGAGATTCTCGGTTGCATTTGGACAAACACTTTAG 1182 0.4137 MGRHSCCYKQKLRKGLWSPDEDEKLLNYITQHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEEDSIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSSLKKKLRQRGIDPNTHQPLCEVEIIKDKDYKEPTPDNKTIHKASVGSNHEMINSLIDPPKQKATTSISIERYHPLQMSSTSNNIINNNTTSTQELFQDKFGTTCHDQGYFSFYGSPNMGNIPSSFCFIPGSSTSDLNNSSTINFSMLNSVSTSILPKHVKSNNPSISSDSSSITQLQNSTNFYDAQSHHHVPLQAELQQEGIKWSEYLNTPLFLGNAAVKNQSTTTTTTTQSIYSSDEVIKPAEPSGFITDESSTTWHQHHFQPLDLYTKDMQRFSVAFGQTL* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0505 393 CDD SANT 69 112 IPR001005 -
Lja1g0505 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lja1g0505 393 SMART sant 66 114 IPR001005 -
Lja1g0505 393 SMART sant 13 63 IPR001005 -
Lja1g0505 393 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja1g0505 393 CDD SANT 17 61 IPR001005 -
Lja1g0505 393 PANTHER HOMEODOMAIN-RELATED 271 386 - -
Lja1g0505 393 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lja1g0505 393 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lja1g0505 393 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja1g0505 393 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja1g0505 393 PANTHER MYB DOMAIN PROTEIN 55 1 286 - -
Lja1g0505 393 PANTHER MYB DOMAIN PROTEIN 55 271 386 - -
Lja1g0505 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lja1g0505 393 Gene3D - 68 137 - -
Lja1g0505 393 PANTHER HOMEODOMAIN-RELATED 1 286 - -
Lja1g0505 393 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0505 Lja-Chr1 4535424 4537038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0505 1 148 MYB Transcription Factor Family AT1G09540 83.784 4.56e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g0505 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0505 K09422 - gmx:778072 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0505 1 4535424 4537038 Lja5g1330 5 13326017 13328248 ECH
Lja1g0505 1 4535424 4537038 Lja1g0505 1 4535424 4537038 ECH
Lja5g1330 5 13326017 13328248 Lja1g0505 1 4535424 4537038 ECH
Lja1g0505 1 4535424 4537038 Lja5g1330 5 13326017 13328248 PCT