Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0504 ATGGCGAGGTTTTTCTGGGTTGGCATTGCAATAACACTTGTTTTAGTTAGCAACTGTGTTGATGGGTCTGAGGGTTACCTACATCACTTCAACGAAACGGAGCTGTCTTTGTTGGAAGCACATGAAGCAGCAGCATCAGCCTTATCATTCTCCGGGAGGAATAATCCTCTGCTTGTAGGCCTCACCCTTATTCAAAATGCAGCTGCTAAAGGAGCAGTCTGCTTGGATGGAACATTGCCTGGTTACCATTTGCATCGTGGATATGGATCAGGAGCAAATAGTTGGCTTGTTAACTTAGAGGGAGGTGGATGGTGCAATAACATTAGAACGTGTGTTTATCGTAAGAAAACCCGGCGTGGATCGTCGGCCTTCATGGAAAAGGAGATACCCTTTACAGGAATACTGAGTAACAAAGCTGAAGAAAATCCAGATTTTTTCAATTGGAACAGAGTAAAGCTTCGTTATTGTGATGGCGCCTCATTTGCTGGGGATGCTGCACACCCGACTGCACAACTGCAATTCAGAGGTCAACGTATTTGGGCAGCTGCGATGGAAGACTTGATGTCAAAGGGAATGCGTTTTGCCAATCAGGCTCTTCTTTCGGGATGCTCTGCGGGTGGCCTAGCTACTATTATACACTGTGATGAGTTCCGAGGTTACTTTCCAAGGACTGCTAAAGTGAAGTGTCTAAGTGATGCTGGGTTGTTTCTTGATGCGATTGATGTATCTGGTGGGCGTTCTCTCAGGAACTTATACAGTGGTGTCGTAGGATTGCAGAGAGTGCAGAAGAATCTACCACAAATTTGTACTAATCACCTTGATCCCACCTCGTGCTTCTTCCCTCAAAACTTGATTTCCAGTGTTAGAACCCCGCTATTTATTCTTAATGCTGCTTATGATTCATGGCAGATTCAATCTAGCTTAGCTCCTCCAACAGCAGATCCTCATGGCTATTGGCATGATTGTAGATTAAACCATGCTAAATGTAGTAGATCACAAGTCCAATTTCTGCAAGGATTCAGGAATCGCATGCTGAATGTTATTAAAGACTTCTCGAGATCAAACCGGAATGGATTGTTTATAAATTCATGTTTTGCTCACTGCCAATCCGAAAGACAAGACACATGGTTTTCTGACAATTCTCCTGTTATAGGGAACAAGGCAATTGCGGTGGCTGTTGGAGACTGGTATTTTGACCGAGCAGGTGTTAAGGCGATTGATTGTCCTTATCCTTGTGATAAGACATGCCACAATCTGATTTTTGCATAA 1269 0.4381 MARFFWVGIAITLVLVSNCVDGSEGYLHHFNETELSLLEAHEAAASALSFSGRNNPLLVGLTLIQNAAAKGAVCLDGTLPGYHLHRGYGSGANSWLVNLEGGGWCNNIRTCVYRKKTRRGSSAFMEKEIPFTGILSNKAEENPDFFNWNRVKLRYCDGASFAGDAAHPTAQLQFRGQRIWAAAMEDLMSKGMRFANQALLSGCSAGGLATIIHCDEFRGYFPRTAKVKCLSDAGLFLDAIDVSGGRSLRNLYSGVVGLQRVQKNLPQICTNHLDPTSCFFPQNLISSVRTPLFILNAAYDSWQIQSSLAPPTADPHGYWHDCRLNHAKCSRSQVQFLQGFRNRMLNVIKDFSRSNRNGLFINSCFAHCQSERQDTWFSDNSPVIGNKAIAVAVGDWYFDRAGVKAIDCPYPCDKTCHNLIFA* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0504 422 PANTHER NOTUM-RELATED 4 421 IPR004963 GO:0016787
Lja1g0504 422 PANTHER PECTIN ACETYLESTERASE 4 421 - -
Lja1g0504 422 Pfam Pectinacetylesterase 55 401 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0504 Lja-Chr1 4522321 4527223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0504 1 421 Carbohydrate Esterase AT1G57590 67.299 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0504 K19882 - gmx:100782401 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0504 1 4522321 4527223 Lja5g1329 5 13318857 13322380 ECH
Lja1g0504 1 4522321 4527223 Lja1g0504 1 4522321 4527223 ECH
Lja5g1329 5 13318857 13322380 Lja1g0504 1 4522321 4527223 ECH
Lja4g1447 4 13266473 13272150 Lja1g0504 1 4522321 4527223 ECH
Lja1g0504 1 4522321 4527223 Lja5g1329 5 13318857 13322380 PCT