Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0499 ATGGCGTGGTGGGAGCTTGGAAAGAAGAGAATGTACATGAATTTTACTAGAGCGTTGACTAAAACGCCATTTAGGCATTTAGCAGGGTCAAGTCATGCATCTACCTTTGCTGCAAATTCTGTTTATGCATCAGCAAGATTTGTGCCAGATTTCATCAACCACTCATCCATGGGAGTGACTGGTTTTTCTAGTGGCACTGAAGATTGTGGAATACGGTGCTTCCATACTAGCTCACAAGTTTGGGCAAGAAGTGGTGAGACATTTGGTTTGAAGACCCCAAAAAAGGAGAAGTATGTTAGAAAAGAGAGTAGAAACCAGCCTCCTGTTGAAGCTCCATATGTCCCTCGTAACGTCACAGCTACCAAGTCTAATCCTGTTAAAACAGTAGAAATATTTGAAGGCATGACCCTTGTTGAACTGGCAAAGCGTACTGGAAAATCAGTATCTTCATTGCAGGATATCCTCACAAATGTCGGTGAAAAGGTTGGATCAGAGTTTGAGCCTCTCAGCATGGATATTTCAGAGCTTGTTGCACTGGAGGTTGGTGTCAATGTTAAGAGGCTACATTCAACTGAAGGTAATGAGGTTTTACCACGGCCTGCAGTTGTGACAGTTATGGGTCATGTAGATCATGGTAAAACTTCTCTTCTTGATGCCTTGCGTCAAACATCAGTTGCAGCCAAGGAGGCCGGTGGCATAACTCAGCATATAGGTGCCTTTGTGGTGGTCATGCCTTCAGGAGCATCAATCACATTTCTCGACACTCCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAGGTGCGGCAGTCACAGATATAGTAGTGCTAGTTGTTGCTGCAGATGACGGTGTGATGCCTCAGACTCTTGAAGCCATGTCCCATGCAAAAGCAGCTAATGTACCAATTGTAGTTGCAATTAACAAATGTGATAAACCGGGTGCAAATCCTGAAAGAGTAAAATTGCAGATGGCTTCAGAGGGCTTGCTGCTGGAGGAGATGGGTGGTGATATTCAGGTTGTTGAAGTTTCAGCAACTGCAAAAACTGGACTGGATAACCTAGAGGAAGCTTTAGTCCTTCAGGCTGATATGATGGAGCTTAAAGCACGGGTTGACGGGCCTGCTCAAGCGTATGTGGTGGAAGCAAGACTTGACAAAGGACGGGGTCCATTGGTAACTACTATAGTGAAGGCAGGAACTCTAGTTTGTGGCCAGTATGTGGTTGTAGGCTCACAATGGGGAAGAATAAAGGCTATCAAAGACATGGTAGGGAGGTTAACTCAACGAGCAACTCCTGCAATGCCTGTTGAGATTGAAGGGCTTCGAGGGCTGCCAATGGCTGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGAGCTCGAATGCTTAGTTCCGGTAGGAAAAAGAAAGCTGAGGAGGATAGGCTTAGAAACAAGATGATACCGGACAATCCAACTACTTCAGATGATTCTGTGGAGGTTCCACTGACGGTTGAATTGCCAGTAATTGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCTGTCACAGATTCATTGAAAACTTTAAATAGTCCTCAGGTGTTTGTGAATATTGTCCATGTTGGTGTTGGGCCGATTTCTCAATCTGATGTGGACTTAGCAAAGGCTTGTGGTGCGTGCATAGTTGGATTCAATATCAAGAGTCCGCCTACTTCTATTACCCAAGCAGCAACTCGTTCTAACATCAAGGTAATTCTGCACCGCGTGATTTATCATCTGTTGGAGGACATAGGCGATGTGATAATAGAGAAGGCTCCTGGGACTTCTGAGACCCATGTATCTGGGCAAGCAGAAGTGTTGAATATCTTTGAGGTCAAAGGGAGCAAGACCAAGGGACCTGATGTGAAGATAGCGGGTTGTCGGGTTGTTGATGGTTTTGTAGCCAGGTCAGGAACCATAAGGCTCCTGAGGAGTGGGGAAGTTATGTTTGAAGGACCGTGTGCATCTCTTAAGCGTGAGAAGCAGGATGTGGATACTGTGAAAAAGGGTAATGAGTGTGGGCTAGTCATCAGTGACTGGCATGATTTCCAGATTGGAGATGTCATCCAGTGCTTGGAACAAGTCATAAGGAAACCCAAGTTCATCAAGTCAGAGAGTGGTGCTGTTCGAATTGAGTGCTGA 2160 0.4537 MAWWELGKKRMYMNFTRALTKTPFRHLAGSSHASTFAANSVYASARFVPDFINHSSMGVTGFSSGTEDCGIRCFHTSSQVWARSGETFGLKTPKKEKYVRKESRNQPPVEAPYVPRNVTATKSNPVKTVEIFEGMTLVELAKRTGKSVSSLQDILTNVGEKVGSEFEPLSMDISELVALEVGVNVKRLHSTEGNEVLPRPAVVTVMGHVDHGKTSLLDALRQTSVAAKEAGGITQHIGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPERVKLQMASEGLLLEEMGGDIQVVEVSATAKTGLDNLEEALVLQADMMELKARVDGPAQAYVVEARLDKGRGPLVTTIVKAGTLVCGQYVVVGSQWGRIKAIKDMVGRLTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRKKKAEEDRLRNKMIPDNPTTSDDSVEVPLTVELPVIVKADVQGTVQAVTDSLKTLNSPQVFVNIVHVGVGPISQSDVDLAKACGACIVGFNIKSPPTSITQAATRSNIKVILHRVIYHLLEDIGDVIIEKAPGTSETHVSGQAEVLNIFEVKGSKTKGPDVKIAGCRVVDGFVARSGTIRLLRSGEVMFEGPCASLKREKQDVDTVKKGNECGLVISDWHDFQIGDVIQCLEQVIRKPKFIKSESGAVRIEC* 720
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0499 719 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 198 368 IPR000795 GO:0003924|GO:0005525
Lja1g0499 719 TIGRFAM IF-2: translation initiation factor IF-2 128 704 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Lja1g0499 719 Pfam Translation-initiation factor 2 497 590 IPR023115 -
Lja1g0499 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 389 IPR027417 -
Lja1g0499 719 CDD mtIF2_IVc 608 697 - -
Lja1g0499 719 Gene3D - 497 600 IPR036925 -
Lja1g0499 719 Gene3D Translation factors 371 484 - -
Lja1g0499 719 Hamap Translation initiation factor IF-2 [infB]. 8 705 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Lja1g0499 719 TIGRFAM small_GTP: small GTP-binding protein domain 201 354 IPR005225 GO:0005525
Lja1g0499 719 SUPERFAMILY Translation proteins 372 454 IPR009000 -
Lja1g0499 719 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 499 607 IPR036925 -
Lja1g0499 719 Gene3D Translation factors 602 704 - -
Lja1g0499 719 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 84 710 IPR015760 -
Lja1g0499 719 SUPERFAMILY Translation proteins 603 704 IPR009000 -
Lja1g0499 719 CDD IF2_mtIF2_II 374 469 IPR044145 -
Lja1g0499 719 Pfam Elongation factor Tu GTP binding domain 203 360 IPR000795 GO:0003924|GO:0005525
Lja1g0499 719 Gene3D - 196 370 IPR027417 -
Lja1g0499 719 PANTHER TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIAL 84 710 - -
Lja1g0499 719 CDD IF2_eIF5B 202 365 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja1g0499 Lja-Chr1 4489955 4495767 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0499 189 683 Eukaryotic Initiation Factors Gene Family AT1G76810 27.895 8.56e-29 121
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0499 K02519 - gmx:100781314 1187.94