Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0495 ATGGCGTCCATCACCACAGTCGTCGGTGTTTCCTCCGCATACCAACCTCCTTCTCTCAAAAGACCTACAACAGCCACCATTTCTCCTTCTCCAGCCTCCGTCAAGCTGCTTCCATGTCTAGTCGACACCACCAAGGTCTCACGCTCTATCCGCCACCCGACCTTCGTCCCTTCTGCCATTGCCACCCCCAATTCCTCTTCCTCTTCCCTCCTCAGTGACCAAGCTTTCAGAGGAATTGCCCAAAATAACAACGACGACGACAGCGGCAACGGCTTCCTCTCCGATTCTCCCACCGCCGACGAACTCGACGTCACCAAGCTTGGCCTCCCTCCCCGCCTCGTCGAGTCCCTCCATAACCGCTCAATTACCCACCTTTTCCCCATTCAGAGAGCGGTGTTGATACCTGCGCTAGAAGGTAGAGACATCATTGCTCGAGCCAAGACTGGGACCGGGAAGACATTGGCATTTGGGATTCCAATCATTAAACACATCACTGAAGATGAGCATGCAGTTTCTCACAGGAGGTCTGCTGGTCGTCTTCCTAGAGTTTTGGTCCTTGCACCTACCAGGGAGTTGGCTAGGCAAGTAGAGAAAGAGATAAAAGAATCCGCGCCTTATCTCAGCACCGTTTGTGTTTATGGGGGTGTTTCTTATGTTACCCAGCAAAGTGCACTTACTCGTGGCGTTGATGTCGTGGTCGGAACGCCTGGTAGGATCATTGACCTCATCAACGGGAACAGCCTTAAGCTCAGTGAAGTTCAGTACTTGGTTCTCGATGAAGCTGATCAAATGCTCGCTGTTGGGTTTGAGGAGGATGTGGAAACGATTTTAGAAACGGTCCCGTCTCAAAGGCAGACCATGCTCTTTTCTGCAACCATGCCCGGTTGGGTGAAGAAATTGTCTAGAAAATATTTGAACAATCCTTTGACAATTGATTTGGTTGGTGATGAAGAAGAAAAGCTTGCTGAAGGGATAAAACTTTATGCTCTATCAGCCACTTCCACTTCAAAGCGGACAATTCTGACTGATCTTATAACTGTTTATGCAAAAGGTGGGAAGACTATAGTTTTTACACAGACAAAAAGAGATGCTGATGAAGTATCATTGGCATTAACAAGTAGTATAACTTCCGAAGCTCTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTAAATGGTTTCAGGCAAGGAAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATTCATTATGAGCTTCCCAATGATCCAGAGACTTTTGTTCATCGTTCTGGCCGGACTGGGCGTGCAGGAAAGCTAGGTAATGCCATTCTGATGTACACCAATAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTAGGATGCAAATTTGAATTTGTTAACCCACCAGCTATGGAAGAGGTTTTGGCAGCATCTGCTGACCAAGTTGTTGCCACGCTTAATGGAGTTCATCCTGAGTCTATTGAGTTTTTCACCCCAACTGCGCAAAAACTAATTGAAGAACAAGGAACAAGTGCCCTTGCAGCTGCACTTGCACATCTGAGTGGATTCTCCAAACCTCCATCATCACGGTCACTTATCACCCATGAACAGGGATGGACTACTTTGCAACTGACTCTAGATTCAGATACCTCGAGAAGATATTTTTCAGCAAGAAATGTTACTGGGTTTCTTTCAGATGTTTATTCTACAGCTGCTGATGAAATTGGAAAAATACACTTACTTGCAGATGAACGGGTCCAAGGAGCCGTATTTGATCTTCCAGAGGAAATTGCTAAAGAGTTACTTAATAAGGATGTACCAGCTGGACATACTATTTCCAAGATCACCAAGTTACCTCCTTTGCAAGATGACGGCCCTGCGAGCGATTTCTATGGGAAGTTTTCTGATAGAGATGGAGGTAGCCGAAGAGGAGGAGGTTCTAGGGACCGGAGAGGTGGTTTCAAAAGCTCACGGGGAGGATGGGGTGGTGGCCGTGACTCTGATGACGGCTTTGGTGACCAGTATAGGAGAGGTGGTGGTGGTGACCAGTATAGGAGAGGTGGTGGTAGTAGTAGTAGTAGAAATTCTAGAACTGGCGGCAACAGCTGGTCTCGAGCAGGAAAAAGCAGTGGGGATGATTGGCTAATTGGAGGACGATCAAGCAGCAGGTCCTCTTCATCAGACAGAGCCGGCTTTGGAGGGGCCTGTTTTAGTTGTGGCGAATCTGGGCACCGAGCGTCTGATTGTCCAAACAAGCTAGGAGGTGGGTTCTACTAG 2307 0.4751 MASITTVVGVSSAYQPPSLKRPTTATISPSPASVKLLPCLVDTTKVSRSIRHPTFVPSAIATPNSSSSSLLSDQAFRGIAQNNNDDDSGNGFLSDSPTADELDVTKLGLPPRLVESLHNRSITHLFPIQRAVLIPALEGRDIIARAKTGTGKTLAFGIPIIKHITEDEHAVSHRRSAGRLPRVLVLAPTRELARQVEKEIKESAPYLSTVCVYGGVSYVTQQSALTRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVETILETVPSQRQTMLFSATMPGWVKKLSRKYLNNPLTIDLVGDEEEKLAEGIKLYALSATSTSKRTILTDLITVYAKGGKTIVFTQTKRDADEVSLALTSSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGNAILMYTNSQRRTVRSLERDVGCKFEFVNPPAMEEVLAASADQVVATLNGVHPESIEFFTPTAQKLIEEQGTSALAAALAHLSGFSKPPSSRSLITHEQGWTTLQLTLDSDTSRRYFSARNVTGFLSDVYSTAADEIGKIHLLADERVQGAVFDLPEEIAKELLNKDVPAGHTISKITKLPPLQDDGPASDFYGKFSDRDGGSRRGGGSRDRRGGFKSSRGGWGGGRDSDDGFGDQYRRGGGGDQYRRGGGSSSSRNSRTGGNSWSRAGKSSGDDWLIGGRSSSRSSSSDRAGFGGACFSCGESGHRASDCPNKLGGGFY* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0495 768 CDD DEADc 113 312 - -
Lja1g0495 768 Pfam DEAD/DEAH box helicase 126 300 IPR011545 GO:0003676|GO:0005524
Lja1g0495 768 MobiDBLite consensus disorder prediction 625 768 - -
Lja1g0495 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 466 IPR027417 -
Lja1g0495 768 CDD GUCT_Hera 539 619 - -
Lja1g0495 768 Pfam Helicase conserved C-terminal domain 337 445 IPR001650 -
Lja1g0495 768 CDD SF2_C_DEAD 325 454 - -
Lja1g0495 768 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 340 485 IPR001650 -
Lja1g0495 768 SMART helicmild6 365 445 IPR001650 -
Lja1g0495 768 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 133 311 IPR014001 -
Lja1g0495 768 ProSiteProfiles Zinc finger CCHC-type profile. 746 761 IPR001878 GO:0003676|GO:0008270
Lja1g0495 768 Pfam Zinc knuckle 745 761 IPR001878 GO:0003676|GO:0008270
Lja1g0495 768 SMART c2hcfinal6 745 761 IPR001878 GO:0003676|GO:0008270
Lja1g0495 768 Pfam GUCT (NUC152) domain 532 632 IPR012562 GO:0003723|GO:0004386|GO:0005524
Lja1g0495 768 MobiDBLite consensus disorder prediction 725 741 - -
Lja1g0495 768 PANTHER - 14 758 - -
Lja1g0495 768 SUPERFAMILY Retrovirus zinc finger-like domains 726 764 IPR036875 GO:0003676|GO:0008270
Lja1g0495 768 SMART ultradead3 121 328 IPR014001 -
Lja1g0495 768 Gene3D - 736 766 - -
Lja1g0495 768 Gene3D - 103 315 IPR027417 -
Lja1g0495 768 MobiDBLite consensus disorder prediction 645 665 - -
Lja1g0495 768 MobiDBLite consensus disorder prediction 696 718 - -
Lja1g0495 768 Gene3D - 328 522 IPR027417 -
Lja1g0495 768 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 14 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0495 Lja-Chr1 4455174 4461065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0495 107 467 Eukaryotic Initiation Factors Gene Family AT1G72730 37.158 1.35e-64 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0495 - - gmx:100789516 1019.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0495 1 4455174 4461065 Lja5g1318 5 13220796 13226414 ECH
Lja1g0495 1 4455174 4461065 Lja1g0495 1 4455174 4461065 ECH
Lja1g0495 1 4455174 4461065 Lja5g1318 5 13220796 13226414 PCT