Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja1g0495 | ATGGCGTCCATCACCACAGTCGTCGGTGTTTCCTCCGCATACCAACCTCCTTCTCTCAAAAGACCTACAACAGCCACCATTTCTCCTTCTCCAGCCTCCGTCAAGCTGCTTCCATGTCTAGTCGACACCACCAAGGTCTCACGCTCTATCCGCCACCCGACCTTCGTCCCTTCTGCCATTGCCACCCCCAATTCCTCTTCCTCTTCCCTCCTCAGTGACCAAGCTTTCAGAGGAATTGCCCAAAATAACAACGACGACGACAGCGGCAACGGCTTCCTCTCCGATTCTCCCACCGCCGACGAACTCGACGTCACCAAGCTTGGCCTCCCTCCCCGCCTCGTCGAGTCCCTCCATAACCGCTCAATTACCCACCTTTTCCCCATTCAGAGAGCGGTGTTGATACCTGCGCTAGAAGGTAGAGACATCATTGCTCGAGCCAAGACTGGGACCGGGAAGACATTGGCATTTGGGATTCCAATCATTAAACACATCACTGAAGATGAGCATGCAGTTTCTCACAGGAGGTCTGCTGGTCGTCTTCCTAGAGTTTTGGTCCTTGCACCTACCAGGGAGTTGGCTAGGCAAGTAGAGAAAGAGATAAAAGAATCCGCGCCTTATCTCAGCACCGTTTGTGTTTATGGGGGTGTTTCTTATGTTACCCAGCAAAGTGCACTTACTCGTGGCGTTGATGTCGTGGTCGGAACGCCTGGTAGGATCATTGACCTCATCAACGGGAACAGCCTTAAGCTCAGTGAAGTTCAGTACTTGGTTCTCGATGAAGCTGATCAAATGCTCGCTGTTGGGTTTGAGGAGGATGTGGAAACGATTTTAGAAACGGTCCCGTCTCAAAGGCAGACCATGCTCTTTTCTGCAACCATGCCCGGTTGGGTGAAGAAATTGTCTAGAAAATATTTGAACAATCCTTTGACAATTGATTTGGTTGGTGATGAAGAAGAAAAGCTTGCTGAAGGGATAAAACTTTATGCTCTATCAGCCACTTCCACTTCAAAGCGGACAATTCTGACTGATCTTATAACTGTTTATGCAAAAGGTGGGAAGACTATAGTTTTTACACAGACAAAAAGAGATGCTGATGAAGTATCATTGGCATTAACAAGTAGTATAACTTCCGAAGCTCTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTAAATGGTTTCAGGCAAGGAAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATTCATTATGAGCTTCCCAATGATCCAGAGACTTTTGTTCATCGTTCTGGCCGGACTGGGCGTGCAGGAAAGCTAGGTAATGCCATTCTGATGTACACCAATAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTAGGATGCAAATTTGAATTTGTTAACCCACCAGCTATGGAAGAGGTTTTGGCAGCATCTGCTGACCAAGTTGTTGCCACGCTTAATGGAGTTCATCCTGAGTCTATTGAGTTTTTCACCCCAACTGCGCAAAAACTAATTGAAGAACAAGGAACAAGTGCCCTTGCAGCTGCACTTGCACATCTGAGTGGATTCTCCAAACCTCCATCATCACGGTCACTTATCACCCATGAACAGGGATGGACTACTTTGCAACTGACTCTAGATTCAGATACCTCGAGAAGATATTTTTCAGCAAGAAATGTTACTGGGTTTCTTTCAGATGTTTATTCTACAGCTGCTGATGAAATTGGAAAAATACACTTACTTGCAGATGAACGGGTCCAAGGAGCCGTATTTGATCTTCCAGAGGAAATTGCTAAAGAGTTACTTAATAAGGATGTACCAGCTGGACATACTATTTCCAAGATCACCAAGTTACCTCCTTTGCAAGATGACGGCCCTGCGAGCGATTTCTATGGGAAGTTTTCTGATAGAGATGGAGGTAGCCGAAGAGGAGGAGGTTCTAGGGACCGGAGAGGTGGTTTCAAAAGCTCACGGGGAGGATGGGGTGGTGGCCGTGACTCTGATGACGGCTTTGGTGACCAGTATAGGAGAGGTGGTGGTGGTGACCAGTATAGGAGAGGTGGTGGTAGTAGTAGTAGTAGAAATTCTAGAACTGGCGGCAACAGCTGGTCTCGAGCAGGAAAAAGCAGTGGGGATGATTGGCTAATTGGAGGACGATCAAGCAGCAGGTCCTCTTCATCAGACAGAGCCGGCTTTGGAGGGGCCTGTTTTAGTTGTGGCGAATCTGGGCACCGAGCGTCTGATTGTCCAAACAAGCTAGGAGGTGGGTTCTACTAG | 2307 | 0.4751 | MASITTVVGVSSAYQPPSLKRPTTATISPSPASVKLLPCLVDTTKVSRSIRHPTFVPSAIATPNSSSSSLLSDQAFRGIAQNNNDDDSGNGFLSDSPTADELDVTKLGLPPRLVESLHNRSITHLFPIQRAVLIPALEGRDIIARAKTGTGKTLAFGIPIIKHITEDEHAVSHRRSAGRLPRVLVLAPTRELARQVEKEIKESAPYLSTVCVYGGVSYVTQQSALTRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVETILETVPSQRQTMLFSATMPGWVKKLSRKYLNNPLTIDLVGDEEEKLAEGIKLYALSATSTSKRTILTDLITVYAKGGKTIVFTQTKRDADEVSLALTSSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGNAILMYTNSQRRTVRSLERDVGCKFEFVNPPAMEEVLAASADQVVATLNGVHPESIEFFTPTAQKLIEEQGTSALAAALAHLSGFSKPPSSRSLITHEQGWTTLQLTLDSDTSRRYFSARNVTGFLSDVYSTAADEIGKIHLLADERVQGAVFDLPEEIAKELLNKDVPAGHTISKITKLPPLQDDGPASDFYGKFSDRDGGSRRGGGSRDRRGGFKSSRGGWGGGRDSDDGFGDQYRRGGGGDQYRRGGGSSSSRNSRTGGNSWSRAGKSSGDDWLIGGRSSSRSSSSDRAGFGGACFSCGESGHRASDCPNKLGGGFY* | 769 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja1g0495 | 768 | CDD | DEADc | 113 | 312 | - | - | |
Lja1g0495 | 768 | Pfam | DEAD/DEAH box helicase | 126 | 300 | IPR011545 | GO:0003676|GO:0005524 | |
Lja1g0495 | 768 | MobiDBLite | consensus disorder prediction | 625 | 768 | - | - | |
Lja1g0495 | 768 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 181 | 466 | IPR027417 | - | |
Lja1g0495 | 768 | CDD | GUCT_Hera | 539 | 619 | - | - | |
Lja1g0495 | 768 | Pfam | Helicase conserved C-terminal domain | 337 | 445 | IPR001650 | - | |
Lja1g0495 | 768 | CDD | SF2_C_DEAD | 325 | 454 | - | - | |
Lja1g0495 | 768 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 340 | 485 | IPR001650 | - | |
Lja1g0495 | 768 | SMART | helicmild6 | 365 | 445 | IPR001650 | - | |
Lja1g0495 | 768 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 133 | 311 | IPR014001 | - | |
Lja1g0495 | 768 | ProSiteProfiles | Zinc finger CCHC-type profile. | 746 | 761 | IPR001878 | GO:0003676|GO:0008270 | |
Lja1g0495 | 768 | Pfam | Zinc knuckle | 745 | 761 | IPR001878 | GO:0003676|GO:0008270 | |
Lja1g0495 | 768 | SMART | c2hcfinal6 | 745 | 761 | IPR001878 | GO:0003676|GO:0008270 | |
Lja1g0495 | 768 | Pfam | GUCT (NUC152) domain | 532 | 632 | IPR012562 | GO:0003723|GO:0004386|GO:0005524 | |
Lja1g0495 | 768 | MobiDBLite | consensus disorder prediction | 725 | 741 | - | - | |
Lja1g0495 | 768 | PANTHER | - | 14 | 758 | - | - | |
Lja1g0495 | 768 | SUPERFAMILY | Retrovirus zinc finger-like domains | 726 | 764 | IPR036875 | GO:0003676|GO:0008270 | |
Lja1g0495 | 768 | SMART | ultradead3 | 121 | 328 | IPR014001 | - | |
Lja1g0495 | 768 | Gene3D | - | 736 | 766 | - | - | |
Lja1g0495 | 768 | Gene3D | - | 103 | 315 | IPR027417 | - | |
Lja1g0495 | 768 | MobiDBLite | consensus disorder prediction | 645 | 665 | - | - | |
Lja1g0495 | 768 | MobiDBLite | consensus disorder prediction | 696 | 718 | - | - | |
Lja1g0495 | 768 | Gene3D | - | 328 | 522 | IPR027417 | - | |
Lja1g0495 | 768 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 14 | 758 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja1g0495 | Lja-Chr1 | 4455174 | 4461065 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja1g0495 | 107 | 467 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 37.158 | 1.35e-64 | 219 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja1g0495 | - | - | gmx:100789516 | 1019.22 |