Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0488 ATGGGCAATGGCACTTCTCGTGTTGTTGGCTGTTTGGTACCATTTAATGGGAAAAGTGGTGTTGATCTTGAGTTTTTAGAGCCATTAGATGAAGGGTTAGGCCATTCTTTCTGTTATGTCAGGCCATCTATTTTTGAATCTCCTCCCATTACCCCATCAAATTCTGAGAGGTTTACTGTTGATTCAAGTACTCTTGATTCTGAGACATTGAGTGGGTCATTTAGGCATGATAATGGCATTGAAGACAGGTCAGGCAAGAGCTTCCCTGAAACCACATTCAAGACAATCTCAGGGGCTTCAGTCAGTGCCAATGTTTCAACTGCTAGGACTGGTAACCACAATGCACTGCTTACTAGTGATGTCCTTGAGCCTGCTGCATCATTTGAGGGAACATCCTCATTTGCTGCAATCCCATTGCAGCCTGTGCCCCGTGGCTCTGGACCTCTGAATGGTTTCATGTCTGGACCATTGGAGAGGTTTGCCTCTGGTCCCCTAGAAAAGGGTGGTGGTTTCATGTCAGGGCCAATAGAGAAGGGAGTTATGTCGGGTCCTCTCGATGCCACTGATAGTTCCAACTTTTCAGCACCACTTGCCCGCGGTGGCGGTGGCGGCGGTCGAAGGCCACGCCTCCAACGGCTCATGAGAAGTGTAAGTGGACCAGTGAAGAACACTTTATCTCGGACTTTTTCGAAGCCTTCTATGGGAGGCAGTTGGATGCAGCGGTTATTCCTTCACCCAGTGACTCAACTAGCCTGGAATCCCAGAGAGGCTAAGTTCCAACCAGGTGTCTCTAGAAACTGTGGTGATGAGGATGGGCCGTCTGAATTGGAGTATAAACATACACACAATTTGCAGTGGGCTCATGGCAAGGCTGGTGAAGACAGGGTTCATGTTGTGCTTTCTGAAGAACAAGGGTGGTTGTTCATTGGGATATATGATGGTTTTAGTGGACCGGATGCGCCTGATTTCCTGATGAGCCATCTTTATAGATTTATAGACAAGGAATTAGAAGGGTTGCTTTGGGAATATGAAGATACTTCTGTTGATCAACTTAAAACTGATGTCCTAGAAACTGGAAATGCTTTAGTTAATCAAGAATGTCATAGGGGGGAAATGTCGGATGCTCATACCAATTCAAATAAAGAAAGTTCTCTTTGTTTAGAAACTTCTTGTCCAGTAATGGTCAAGGGTCAATCATCTAACAGTGAGATAGTGGAGGAAAAGGATGAAGTTAAGGTCAATGCTGAACAGCACAATTGTGGAAGTCCTAGTATCTCCCATTCTGTTCCTGCATCTGTTCCACTTGGACAATTGGCGGGTCAAGGGAGAAAAAGTTTGCGGCTCTATGAGTTACTTCAGATGGAGTCTTGGAATGAACAGGTGTCAGAACAAGGTAAGGATACTTCAGTTCCTAGGGAAATAACACAAGAGAGGGTTAAGAGGTTCTGCTCCCCAAATGGAAAAGAAGGTACATCAGGACATCAGAATGAAGGTCCTACTACTTCTGGAGAAAATGAAGGCACTGGGTTTAATTCTACCAGCCAGGAGCCTGTAGCTTCTATCTCTGTTTCAGGACAAAGGCAGAATACAAGAAAGTCATTTATTAGTACGAAAATCAGAACAATGTACAGGAAGCAGAAAACCTTACGTAAAAAGCTTTTTCCTTGGAGTTATGATTGGCATAGGGAGGAAACTTTTGTAGACAAGAAATTAGTGGAAGCCTCGGGACCCATTAGAATATGCAAGTCCGGTGTAGATCATAATGCAGTTCTAAGAGCAATGTCTCAAGCTCTAGATAAAACAGAAGAGGCATACATGAAAATGGTGGAGAATAATCTGGACAAAAATCCAGAGCTTGCCTTAATGGGGTCATGTGTTTTAGTGATGCTGATGAAAGATCAAGATGTTTATGTTATGAACCTTGGAGATAGTCGTGCAATTTTGGCTCAGGAACGGCCAAATGATCGTCATCCCAATCCAAGTCTTATCAAAGATGACGTGAGGCATAGAAATAAATCTAGAGAGTCATTAATAGGCATGGAGCTGGATAGAATTTCAGAGGAGTCCCCAATGCACAATATAGACAGGCATGTTAACAAGATGAACAAAAATAGAGAGGTATCTGCTTGCAGATTGAAAATGAGGGCTGTTCAGCTTTCCACAGATCACAGCACAAGTATTGAAGAGGAAATTTTTAGAATTAGAGCTGAACACCCTGACGATAATCAAGCCGTATTAAATGATCGTGTGAAGGGACAATTAAAAGTCACCAGGGCATTTGGTGCTGGATTCCTGAAGAGGCCATCTTTTAATGAACCTCTACTGGAGATGTTTCGAGTTGATTATGTGGGCAATGCTCCTTACCTAAGTTGCACTTCTGCTGTTCTTCATCACCGGCTTTCCTCAAGTGACCGGTTCTTGGTACTCTCCTCTGACGGGCTTTACCAGTATTTCAACAATGAAGAGGTAGTGGCCCATGTCACGTGGTTCATGGAAAATGTCCCTGAAGGTGATCCTGCACAATACCTTATTGCTGAGCTTCTCTTCCGTGCCGCTAAAAAGAATGGAATGGATTTTCATGAATTGCTTGGTATTCCTCAGGGAGATCGGAGAAAATATCATGATGATGTTTCTGTTATGGTGGTTTCTTTGGAGGGAAGGATTTGGAGATCATCTGGATAA 2682 0.4366 MGNGTSRVVGCLVPFNGKSGVDLEFLEPLDEGLGHSFCYVRPSIFESPPITPSNSERFTVDSSTLDSETLSGSFRHDNGIEDRSGKSFPETTFKTISGASVSANVSTARTGNHNALLTSDVLEPAASFEGTSSFAAIPLQPVPRGSGPLNGFMSGPLERFASGPLEKGGGFMSGPIEKGVMSGPLDATDSSNFSAPLARGGGGGGRRPRLQRLMRSVSGPVKNTLSRTFSKPSMGGSWMQRLFLHPVTQLAWNPREAKFQPGVSRNCGDEDGPSELEYKHTHNLQWAHGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRFIDKELEGLLWEYEDTSVDQLKTDVLETGNALVNQECHRGEMSDAHTNSNKESSLCLETSCPVMVKGQSSNSEIVEEKDEVKVNAEQHNCGSPSISHSVPASVPLGQLAGQGRKSLRLYELLQMESWNEQVSEQGKDTSVPREITQERVKRFCSPNGKEGTSGHQNEGPTTSGENEGTGFNSTSQEPVASISVSGQRQNTRKSFISTKIRTMYRKQKTLRKKLFPWSYDWHREETFVDKKLVEASGPIRICKSGVDHNAVLRAMSQALDKTEEAYMKMVENNLDKNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSLIKDDVRHRNKSRESLIGMELDRISEESPMHNIDRHVNKMNKNREVSACRLKMRAVQLSTDHSTSIEEEIFRIRAEHPDDNQAVLNDRVKGQLKVTRAFGAGFLKRPSFNEPLLEMFRVDYVGNAPYLSCTSAVLHHRLSSSDRFLVLSSDGLYQYFNNEEVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNGMDFHELLGIPQGDRRKYHDDVSVMVVSLEGRIWRSSG* 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0488 893 MobiDBLite consensus disorder prediction 459 530 - -
Lja1g0488 893 MobiDBLite consensus disorder prediction 488 530 - -
Lja1g0488 893 SUPERFAMILY PP2C-like 289 368 IPR036457 -
Lja1g0488 893 Gene3D - 263 421 IPR036457 -
Lja1g0488 893 MobiDBLite consensus disorder prediction 470 484 - -
Lja1g0488 893 PANTHER PROTEIN PHOSPHATASE 2C 32 11 893 - -
Lja1g0488 893 SMART PP2C_4 277 882 IPR001932 -
Lja1g0488 893 PANTHER PROTEIN PHOSPHATASE 2C 11 893 IPR015655 GO:0004722|GO:0006470
Lja1g0488 893 SUPERFAMILY PP2C-like 586 885 IPR036457 -
Lja1g0488 893 MobiDBLite consensus disorder prediction 50 74 - -
Lja1g0488 893 ProSiteProfiles PPM-type phosphatase domain profile. 277 884 IPR001932 -
Lja1g0488 893 MobiDBLite consensus disorder prediction 50 89 - -
Lja1g0488 893 Coils Coil 591 611 - -
Lja1g0488 893 CDD PP2Cc 590 884 IPR001932 -
Lja1g0488 893 Gene3D - 511 890 IPR036457 -
Lja1g0488 893 Pfam Protein phosphatase 2C 594 653 IPR001932 -
Lja1g0488 893 Pfam Protein phosphatase 2C 711 855 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0488 Lja-Chr1 4392422 4398153 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0488 1 893 PP2C-type Phosphatase Gene Family AT2G46920 64.602 0.0 1097
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0488 - - gmx:100786856 1552.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0488 1 4392422 4398153 Lja1g0488 1 4392422 4398153 ECH