Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0486 ATGGCGTCTTCATTCTCAACTCAACTGCTTCAATGTCAGACCCCACTTCCTCGTCTTCCTCATATTCAGGGTAATTTTGGGCAAGACATGTTCAAGGTTCGAAGGCCACATATGGTTTGTAGCGGAACTAGATCACAGATTGGTTACTGTAAAGCATTAGCTTCAAGGTCACATTATGCTTTGAGGTTTTCTACCACTCAGCAACCTGAAGGAAGATCAATTAGATATCGGAGAATGAAATGCCTCAATGCTGCGGAGATTGTTCAGGAGCTGCAAGCTGAAGTGACAACCAAATGTTTCTTTGATATAGAAGTTGGGGGTGAACCTGTGGGCAGGATTGTTTTGGGCCTATTTGGAGAGGTTGCTCCTAGAACAGTTGAAAATTTCCGTGTTTTATGCACAGGAGAGAAAGGATATGGTTACAAAGGAAGCTCCTTCCATCGTATCATCCAAGAGTTCATGATTCAAGGAGGGGACTTTACTGAAGGAGATGGAACTGGCGGAACTAGTATCTATGGTTCAAGTTTTGAAGATGAGAGTTTTGCTTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCTGGTCCTAATACCAATGGTAGCCAGTTTTTTATTTGCACAGTTAAGACTCCATGGCTGGACAATCGTCATGTTGTGTTTGGACATGTCATTGATGGAATGGATGTTGTGAGGACACTCGAATCCCAAGAGACAAGCAGGTTAGATATCCCTCGGAAGCCTTGCAGAATTGTTAACTGTGGAGAACTGCCTCAAGATGATTGA 789 0.4335 MASSFSTQLLQCQTPLPRLPHIQGNFGQDMFKVRRPHMVCSGTRSQIGYCKALASRSHYALRFSTTQQPEGRSIRYRRMKCLNAAEIVQELQAEVTTKCFFDIEVGGEPVGRIVLGLFGEVAPRTVENFRVLCTGEKGYGYKGSSFHRIIQEFMIQGGDFTEGDGTGGTSIYGSSFEDESFALKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRTLESQETSRLDIPRKPCRIVNCGELPQDD* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0486 262 CDD cyclophilin_ABH_like 98 256 - -
Lja1g0486 262 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 141 158 IPR020892 GO:0003755|GO:0006457
Lja1g0486 262 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 100 257 IPR002130 GO:0000413|GO:0003755
Lja1g0486 262 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 101 256 IPR002130 GO:0000413|GO:0003755
Lja1g0486 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 117 132 IPR002130 GO:0000413|GO:0003755
Lja1g0486 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 146 158 IPR002130 GO:0000413|GO:0003755
Lja1g0486 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 204 216 IPR002130 GO:0000413|GO:0003755
Lja1g0486 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 189 204 IPR002130 GO:0000413|GO:0003755
Lja1g0486 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 217 232 IPR002130 GO:0000413|GO:0003755
Lja1g0486 262 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 53 261 - -
Lja1g0486 262 SUPERFAMILY Cyclophilin-like 91 258 IPR029000 -
Lja1g0486 262 Gene3D - 83 262 IPR029000 -
Lja1g0486 262 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 53 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0486 Lja-Chr1 4377990 4380746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0486 111 255 U-box Gene Family AT5G67530 45.205 4.86e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0486 K03768 - gmx:100785805 426.402