Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0483 ATGGGAAGACACTCTTGCTGTTATAAGCAGAAGCTTAGGAAGGGTCTGTGGTCACCAGAGGAGGATGAAAAACTTTTGAGACATATTACTATGTATGGTCATGGATGTTGGAGTTCAGTTCCTAAGCAAGCAGGTTTGCAGAGGTGTGGTAAGAGCTGCAGGCTTAGGTGGATCAACTACTTAAGGCCTGATTTAAAGAGAGGTGCATTTTCACAAGAAGAGGAAAATCTCATCATTGAACTTCATGCAGTATTAGGGAACAGATGGTCTCAAATTGCAACACAATTGCCTGGGAGGACTGACAATGAAATAAAGAATCTGTGGAATTCTTGCTTGAAGAAGAAACTCAGGCAAAGAGGTATAGACCCTGTCACTCATAAACCACTGTCTGAGGTTGAAAATGGAAAAGAGGACAAAAACAAGAGCCAAGAGAAAGTTTCCAATGAATTGAACCTCCTGAAATCAGAGAGTTTCAAGTCTGATGCAGCTTCGTATGAACAGAATTCCTCTTCAATTGCCCCAAAGGCTTATACAACTGAGATGGAAGGTTCTTCCAGCTCCAATTGTTCTAGTAAAGACTTGCTCCTAGACAGGTTTATGAGCCAACCCCAAAATTTGATGGGAAATTATTACCCCCTTCAAATGAGTTTTGCATCCACTGATAGTGCCCCAACCAATTCAAACTCTTGTCATTGGTTCAGCCAAATTGGGAGGCCCTCTGATGTGAACTCTGAATATGCTTCTAATATTATGTCTATTCTTCCACCAACTAGTTCTTTTTGCTACAAACCATCACTTCCCGTTCCCTTAGAAGATATTTCTACACCCTCTTTTGCTGTGAATGGATCCAATTACTGGGAAGCCAGTGCTTCCAACAATAGCAATAGCAGCAACACAAGTGATGGCATTGGCAGCAGAGAGCTGTCAAGTAGCAACATCCTTTCTTCTTCTTCTTGGGGTTTGACAGATTGTAGCTCCTCTACTGAAGAAGCCAAGTGGTGTGAGTACCTTCAAAACCCAATGTTAATGCTGGAAGCTGCACAAAATCAAACACCTTCCAAGCATTTGGTGCCTGATACTTTAGGGGCCATGTTGCCTCATTCCAAGCAGCAAGAAGAACCTTCCCAAAGTTCTAGTATCTTTTCCAAGGACCTCCAGAAGCTAACAGCAGCCTTTGAAAATATATAG 1188 0.4217 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITMYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGAFSQEEENLIIELHAVLGNRWSQIATQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVENGKEDKNKSQEKVSNELNLLKSESFKSDAASYEQNSSSIAPKAYTTEMEGSSSSNCSSKDLLLDRFMSQPQNLMGNYYPLQMSFASTDSAPTNSNSCHWFSQIGRPSDVNSEYASNIMSILPPTSSFCYKPSLPVPLEDISTPSFAVNGSNYWEASASNNSNSSNTSDGIGSRELSSSNILSSSSWGLTDCSSSTEEAKWCEYLQNPMLMLEAAQNQTPSKHLVPDTLGAMLPHSKQQEEPSQSSSIFSKDLQKLTAAFENI* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0483 395 MobiDBLite consensus disorder prediction 122 149 - -
Lja1g0483 395 PANTHER HOMEODOMAIN-RELATED 1 388 - -
Lja1g0483 395 PANTHER MYB DOMAIN PROTEIN 55 1 388 - -
Lja1g0483 395 CDD SANT 17 61 IPR001005 -
Lja1g0483 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja1g0483 395 MobiDBLite consensus disorder prediction 122 145 - -
Lja1g0483 395 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lja1g0483 395 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja1g0483 395 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja1g0483 395 Coils Coil 136 156 - -
Lja1g0483 395 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja1g0483 395 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lja1g0483 395 Gene3D - 68 150 - -
Lja1g0483 395 Gene3D - 11 67 - -
Lja1g0483 395 CDD SANT 69 109 IPR001005 -
Lja1g0483 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja1g0483 395 SMART sant 66 114 IPR001005 -
Lja1g0483 395 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0483 Lja-Chr1 4330511 4332622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0483 1 145 MYB Transcription Factor Family AT4G01680 90.345 3.32e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g0483 Myb_DNA-binding 4.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0483 K09422 - gmx:100037467 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0483 1 4330511 4332622 Lja5g1303 5 13110058 13111930 PCT