Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0481 ATGACTGAAAAGATTCTTGACTCTATTTATGGCAATGATTTCTTTGAGCTGGTGTGGGAAAATGGCCAACTAGGTTCATCAAATAGAACAACACCAAAGACTCCTAATAATTTGTGCATAGGGTTTTCACATCAAAGCAATATTGGCCAAGGTTCCTCTCAGATTCATGATTTGCAATTACAATCACCACAAAGCAAGAGTTCTTGTAAGAAGCCTATTGATGAATTTCGGAACTTAAGACCTATGAAAGATTGCACATACTCCTCACAACAGTGCTTACCTTATTCTGCTCCACTCAAGAAACCAAGAATGGATTCAAGCCTAACACCACTAACAAACTCACAGAAACAGAATTTTTCCAACTTTTTGATACCTGAAGTGTTTCTCAAATCCACTAATCATCACAGAAAGAGTGCAACACAGACAACAAGAATTGCACTTTCACCAAGAGTGAAGGAGATTGAACATAGCAAAGTTGAGAAATCTACTAGTAGCAAAGGTGCTACTGACAATTCCACAGTGATTGAATCAGCTAAAGGATCACATGTTCTCACAGGATTTCGAGGACAAAGATTTTTAACTACTAACAAATGGAACACCAAATCCATTGTTGAAGGAAGTGCTGCTGCACCACCACCACTTGATGAACATTCTGAAGCTGTTAGCCATAGTAACAGTTCCAATGGAACTACTCAATATGAAGCACTTGCAAAGGGAAAAGCTAAAAATGATAACTTGTGCAATGAACGAGCAATAGCTTCTTCTTCTGTATGTTCGATTGAAGCCTCATACAACCCAAACTTTGGTAGCAGGAAACATGATCAGGACAGTGATGATTCTGCATTTTTAAGTGATGATGATGAGGAAACAGAAGATTATACAGTGAAGGAAGTTCAAGCTCGAGACGGTACCAGAATCAAGAGAAGAAGAAGCGCAGAGATTCATAATTTATCTGAAAGGAAGCGAAGAGATAAAATCAACAAGAAGATACGGACACTGAAGGAGCTCATACCCAACTGCAACAAGATTGATAAAGCTTCAATGCTTGACGATGCCATTGACTATCTAAAGACCCTCAAACATCAGTTACAGATTATGTCAATGGGGAGAGGGCTATGTATGCCACTTATGATGCCACCACATTTGCCTCAGTTAATGGGAGTTGGAATGGGAGGAATCCCTTGCAACCCACCACAGTTTTCAATTCCATCACTTCCTGGTTTCACAGACAACAGACTTCAGATGTTTGGTTTCTCCAACCAACAAATACCAAACATGTCAATTCCTAATACACCTTTCTTCCCTATCATTGGAAACTCTTCTTCTACACAACAACCATTTATAGCGGCGGCGGAACCATTGCCTTATTCTGCACCCTTAACAACTTTGGAGGCCTCAAACCCCAAGAACTGA 1413 0.3984 MTEKILDSIYGNDFFELVWENGQLGSSNRTTPKTPNNLCIGFSHQSNIGQGSSQIHDLQLQSPQSKSSCKKPIDEFRNLRPMKDCTYSSQQCLPYSAPLKKPRMDSSLTPLTNSQKQNFSNFLIPEVFLKSTNHHRKSATQTTRIALSPRVKEIEHSKVEKSTSSKGATDNSTVIESAKGSHVLTGFRGQRFLTTNKWNTKSIVEGSAAAPPPLDEHSEAVSHSNSSNGTTQYEALAKGKAKNDNLCNERAIASSSVCSIEASYNPNFGSRKHDQDSDDSAFLSDDDEETEDYTVKEVQARDGTRIKRRRSAEIHNLSERKRRDKINKKIRTLKELIPNCNKIDKASMLDDAIDYLKTLKHQLQIMSMGRGLCMPLMMPPHLPQLMGVGMGGIPCNPPQFSIPSLPGFTDNRLQMFGFSNQQIPNMSIPNTPFFPIIGNSSSTQQPFIAAAEPLPYSAPLTTLEASNPKN* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0481 470 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 310 359 IPR011598 GO:0046983
Lja1g0481 470 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 5 470 - -
Lja1g0481 470 SMART finulus 316 365 IPR011598 GO:0046983
Lja1g0481 470 MobiDBLite consensus disorder prediction 151 174 - -
Lja1g0481 470 CDD bHLH_AtPIF_like 310 372 - -
Lja1g0481 470 Gene3D - 306 368 IPR036638 GO:0046983
Lja1g0481 470 MobiDBLite consensus disorder prediction 206 231 - -
Lja1g0481 470 PANTHER TRANSCRIPTION FACTOR PIF3 5 470 IPR044273 GO:0003700|GO:0006355
Lja1g0481 470 Pfam Helix-loop-helix DNA-binding domain 315 359 IPR011598 GO:0046983
Lja1g0481 470 MobiDBLite consensus disorder prediction 267 292 - -
Lja1g0481 470 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 371 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0481 Lja-Chr1 4322618 4325052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0481 256 449 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 40.488 5.06e-36 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g0481 HLH 9.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0481 K12126 - gmx:100804665 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0481 1 4322618 4325052 Lja5g1300 5 13065521 13067839 PCT