Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0480 ATGGGAAAAGCCACTAGTTCTTCCTCTTCTTCAATTAGCAGCACCAACAACCCCCGCTTTGTTCTTTCAACTGCATCCTCTCTCACACAATTCAACACACAAGAACTTCCCACAGATCTTAGGCTTGGACCAAGCATTTCAGCCTCTATGTTAAGGGGGCAATGGCAACCAAACCACCCATCTGGGAGAAACTCACAAGGTGCTGAAGTAAATGATTGCAGTGATAGCAGCTTCTTTGTGAAGGTGTACATGGAAGGCATTCCAATTGGCAGAAAACTCAATATACTAGCTCATGGTGGTTACTATGAGTTAGTAAAGACTCTTGAGAACATGTTTGACACTACCATTCTATGGGGAACAGAGATGGATGGAGTTCAACCAGAGAGATGCCATGTGCTAACTTATGAAGATGAAGAAGGGGATTTGGTCATGGTTGGGGATGTCCCTTGGGAGATGTTTTTATCCACTGTAAAGAGGTTGAAGATCACCAGGGTAGACACATTCGGGTGTTGA 513 0.4425 MGKATSSSSSSISSTNNPRFVLSTASSLTQFNTQELPTDLRLGPSISASMLRGQWQPNHPSGRNSQGAEVNDCSDSSFFVKVYMEGIPIGRKLNILAHGGYYELVKTLENMFDTTILWGTEMDGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0480 170 PANTHER AUXIN-INDUCED PROTEIN 2 169 - -
Lja1g0480 170 Gene3D - 71 169 - -
Lja1g0480 170 SUPERFAMILY CAD & PB1 domains 72 162 - -
Lja1g0480 170 MobiDBLite consensus disorder prediction 51 70 - -
Lja1g0480 170 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 169 IPR003311 GO:0005634|GO:0006355
Lja1g0480 170 Pfam AUX/IAA family 66 164 IPR033389 -
Lja1g0480 170 ProSiteProfiles PB1 domain profile. 77 167 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0480 Lja-Chr1 4314317 4315364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0480 8 162 B3 DNA Binding Superfamily AT5G62000 28.571 5.26e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Lja1g0480 AUX_IAA 2.8e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0480 K14484 - gmx:100818376 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0480 1 4314317 4315364 Lja5g1296 5 13039452 13041216 PCT