Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0478 ATGGAGGAGAACCGACACCATCAACGCCGTGAATTCTCCTTCTTAAGCTCAGGCGGCGACTTCCACCGCCACAATCTCAATCTTGATTGTTCCACAAACAACACAGATCCTCCTACTCCTCCTCCCTTCAAAGAAATGGATTTCTTCAAAATTCATCCTCATAATAGCAACAAAGATGCTGCTGCTGCTGCTGATGATGATCACCACCAACAACAACAGCAACAGCAGTATGATCAAGATCAACGTGACACTCATCTCACCATCACCAAACATGAATCACCATCTCTCGTCACTCATCACCCCGTAAACACTGGACTGAATTTAACATGCTCAAGTTCTGCAAATAATGGTGAAGAAAATACTGAAACTGAGCTGAGTAGAGTTGAAAGTGAATTGCGGAGAGTACAAGAAGAGAATCACAAGTTGAGAATTGTGTTGGACCAGATCACCAAAAGCTATAACCAACTACAAGCTCACCTGCACTTTATCGTTTTGCACAAACAAAACCCTCATCATCAGAATATCGAAATAAATGGGATGATAGCGGGACAAAAATATGTGGACCCAGGACCATGCACAAAATTAGATGTCAAAATTGATGCATCAATTAATTCTGATGATAAGAGTGATCGCGAGGCATCAATTTCTCCTTCAAACAATAAGGAACAAGCTTGTCCTGGTCCTACTGGAGATGTGCTTGACCGGTCATCCTCACAGAGTTTGGGCTCACCCAAGTTAGAAGAATCCAAAACTGCTGAACACGTTGCCGGTGACCAGTTTCATCTCAGAAAAGCCAGGGTTTCCGTGCGTGCAAGATCAGAAGCTCCCATGATTAGTGATGGATGTCAATGGAGGAAATATGGACAAAAAATGGCCAAGGGTAACCCTTGTCCTCGTGCCTACTATCGTTGCACTATGGGTTCAGGATGCCCAGTCCGCAAGCAGGTGCAAAGGTGCGCAGAGGACAGGACAGTGCTGATAACAACCTATGAAGGCAATCACAACCACCCTCTACCACCACCTGCCACTGCCATGGCAAGCACCACTTCAGCTGCGGCGAAAATGCTGCTTTCAGGAACAGCCGCCTCATCAAAGGAAGCGCTAACAACCTCAGCAGGATACTTCTCTTCACTGCCCTACGCTTCAGTGGCAACCCTATCAGCTTCTGCACCGTTCCCAACGATCACCCTTGACCTTACCCACCAGTACCACCACAACCCCATGCAACTTCACCGAGTACCACCTGGTGCAGCGGTCACATTCCCTCTTCCACTAGGGCACCCTATGTTGCTCTCCCAGCAGAAGCTGCTACCACCTGCGGCTCTCCCCCTTCTTCAACTAGGACAACGACCACCAACGGTTGAAACAATGAGTGCAGCCATTGCTTCGGATCCGAACTTCACTGCAGCATTGGCAGCAGCAATCTCATCAATCATAAGAGGGAGTGATGGTCATAATAACAGTAGTAGTGATGTTAATAACAATAGCAATAATGGAAGTGCTATTATTCCCGGTTCACCACAACTTCCTCAGTCATGCACTACATTCTCCACCAACTAG 1560 0.4692 MEENRHHQRREFSFLSSGGDFHRHNLNLDCSTNNTDPPTPPPFKEMDFFKIHPHNSNKDAAAAADDDHHQQQQQQQYDQDQRDTHLTITKHESPSLVTHHPVNTGLNLTCSSSANNGEENTETELSRVESELRRVQEENHKLRIVLDQITKSYNQLQAHLHFIVLHKQNPHHQNIEINGMIAGQKYVDPGPCTKLDVKIDASINSDDKSDREASISPSNNKEQACPGPTGDVLDRSSSQSLGSPKLEESKTAEHVAGDQFHLRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMGSGCPVRKQVQRCAEDRTVLITTYEGNHNHPLPPPATAMASTTSAAAKMLLSGTAASSKEALTTSAGYFSSLPYASVATLSASAPFPTITLDLTHQYHHNPMQLHRVPPGAAVTFPLPLGHPMLLSQQKLLPPAALPLLQLGQRPPTVETMSAAIASDPNFTAALAAAISSIIRGSDGHNNSSSDVNNNSNNGSAIIPGSPQLPQSCTTFSTN* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0478 519 SMART WRKY_cls 278 338 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g0478 519 PANTHER WRKY TRANSCRIPTION FACTOR 47-RELATED 40 519 - -
Lja1g0478 519 ProSiteProfiles WRKY domain profile. 273 339 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g0478 519 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 40 519 IPR044810 GO:0003700
Lja1g0478 519 MobiDBLite consensus disorder prediction 484 519 - -
Lja1g0478 519 SUPERFAMILY WRKY DNA-binding domain 271 339 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g0478 519 Coils Coil 118 152 - -
Lja1g0478 519 Gene3D WRKY domain 263 340 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g0478 519 MobiDBLite consensus disorder prediction 47 66 - -
Lja1g0478 519 MobiDBLite consensus disorder prediction 232 246 - -
Lja1g0478 519 Pfam WRKY DNA -binding domain 280 337 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g0478 519 MobiDBLite consensus disorder prediction 67 82 - -
Lja1g0478 519 MobiDBLite consensus disorder prediction 29 82 - -
Lja1g0478 519 MobiDBLite consensus disorder prediction 203 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0478 Lja-Chr1 4274548 4277881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0478 45 493 WRKY Transcription Factor Family AT1G62300 39.802 1.40e-87 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja1g0478 WRKY 5.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0478 - - lja:Lj1g3v4830200.2 639.032