Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0473 ATGAGGCATAAGAATGGAGGAACGCGTAAACATGATGAGACCAGCACCAAAGGGGATAAGAGCAGACAAAAAGAGAAAGTTGAACTTGTTCCATTTCACAGACTCTTCTCATTTGCAGACTCCATTGACATCCTGCTGATGATTGTTGGCACTATTGGAGCCATTGGAAATGGTTTGAGCATGCCTATCTTGTCATTGCTGTTGGGTCAAATGGTTAATAGCTTCGGAAACAACCAGTTTAGCCCCGACATTGTCAACCAAGTTTCCAAGGTCTGTCTAAAATTTGTATGCTTGGGAATAGGCAATGCTGTGGCTGCATTTCTCCAGGTGGCTTGCTGGATGATCACAGGGGAGAGACAAGCTGCAAGAATAAGGGGCTTGTATTTGAAAACTATACTGAGACAAAATGTTGCTTTCTTCGATAAGGAAACAAACACGGGCGAGGTTATAGGGCGAATGTCAGGGGACACTGTTCTCATACAAGATGCCATGGGTGAGAAGGTTGGGAAATTTTTGCAGCTAATAGCTACATTCATTGGGGGCTATGTGGTAGCATTTATCAAAGGGTGGCTTCTGACGGTTGTCTTGCTATCCTTTCTTCCACTTATTGTTGCTTCAGGCATTGCTATGACATTTATCATAGGAAAGATGGCATCCAGACGTCAAAATGCATATGCAAAAGCCGCACATGTAGCTGAACAAACAATTGGCTCAATAAAAACTGTTGCATCCTTTACAGGGGAAAAGCAAGCAGTATCTAGTTACAGAAGATACCTTGCAGGTGCTTACAAATCTGGAGTTTATGAAGGTTTCGTATTCGGAATGGGCCATGGCATGATTATGTTAGTTGTTTTCTGCACTTTTGCTTTGGCTGTATGGTTTGGAGCAAAGATGATAATAGAAAAAGGATATAACGGGGGTCAGGTGATCAATATCATCATTGCTGTATTAACTGCTTCAATGTCTCTTGGCCAGGCATCTCCTTCCATGAGTGCTTTTGCTGCTGGTCAAGCAGCAGCATATAAAATGTTTCAAACAATTGAGAGAAAGCCAGAGATAGATGCTTATGATCCAAACGGAAAAATATTAGAGGATATTCATGGTGACATAGATATAAAAGATGTTTATTTCAGTTATCCAACCAGGCCTGAGGAGTTAGTATTCAATGGATTCTCTATTCATATACCTAGTGGTACCACTACAGCTTTAGTAGGAGAAAGTGGAAGTGGGAAGTCTACTATTATCAGTTTGATAGAGAGATTCTATGACCCACTAGCAGGTGAAGTTCTTATTGACAGCATCAACATGAAAGATTTTCAACTCAGATGGATCAGAGGAAAAATTGGTCTTGTAAGTCAGGAGCCGGCGCTTTTCGCATCTAGCATTAAGGATAACATTGCATATGGAAAGGAGGGAGCAACAATCCAAGAGATAAGAGTTGCCTTGGAACTTGCAAACGCCGCTAAATTCATTGATAGACTGCCACAGGGATTGGACACTATGGTTGGTGACCATGGGACTCAGCTATCTGGCGGACAGAAACAACGCATCGCCATTGCAAGAGCAATCCTAAAAGATCCAAGAATTCTACTTCTAGATGAAGCTACAAGTGCACTTGATGCACAGTCTCAAAGGACAGTACAAGAAGCTTTGGACAGGGTCATGGTCAACAGAACTACTGTTGTTGTTGCACATCGTCTGAGCACAGTGAGGAATGCTGATATGATCGCTTTAATTCATAGAGGGAAAATGATTGAGAAAGGAACTCACGTAGAATTACTCAAGGATCCTGGTGGAGCTTACTCTCAACTTATACGTTTACAAGAAGTAAACAACGAATCAAAAGAAAGTGCAGACAATCAAAACAAAAGAAAACTTTCTACAGAATCCAGATCATCTTTGGGTAATAGTAGCCGCCACACATTTTCAGTTTCTTCAGGTTTACCTACAGGGGTTGACGTCCCTAAAGCTGGGAACGAAAAGTTACATCCTAAAGAAAAATCACAAGAGGTTCCACTCCTACGCCTTGCTTCCCTAAATAAGCCAGAGATACCAGCACTTTTGATGGGATGTGTAGCTGCCATAGCAAATGGTGCCATACTTCCAATATATGGTGTTTTGCTTTCTAGTGTTATCAAAACACTATATGAGCCATTTCCTGATATGAAAAAAGATTCCAAGTTTTGGTCACTAATGTTCGTGGTCCTCGGAATTGCATCTTTAATGGCAATTCCAGCCCGATGTTACTTTTTCTCTGTAGCTGGCAGCAGGTTAATCCAACGTATTAGGTTGGTTTGTTTTGAGAAGTTGATCAACATGGAAGTTGGTTGGTTTGAAGAGCCTGAGCACTCAATCGGTGCAATTGGTGCAAGACTCTCAACAGATGCTGCCTTTGTACGTGCCCTTGTTGGTGATGCCTTGGGGCTATTGATTCAAAGCATATCAACTGCATTGACAGGTTTGATTGTTGCTTTTATTGCGAGTTGGCAGTTGGCGTTGATTGTTGTTATCATTGCGCCCCTTATGGGAATGAATGGATATGTTCAAATTAAATTCATGAAGGGATTTAGTGCAGATGCAAAGATGATGTATGAGGAAGCGAGTCAAGTTGCTAGTGATGCTGTTGGAAGCATAAGAACAATAGCTTCTTTTTGTGCTGAGGAGAAAGTCATGGAACTATATAGTAAGAAATGTGAAGGTCCAGTAAAAACAGGGATACAACAAGGTTTGATAAGTGGAATAGGATTTGGGGTTTCATTTTTCTTACTTTTTAGTGTTTATGCAACGACTTTCCATGCTGGAGCCAGATTTGTGGACGCTGGCATGGCATCATTCTCGGATGTTTTTCGGGTTTTCTTTGCTTTAACAATGACAGCTATTGGAATTTCACGGTCAAGCTCCCTAGCTCCCGATTCTAGCAAAGGCAAGACAGCTACTGCTTCCATATTTGAAATAATTGATCAGAAGTCAAAGATAGATCCAAGTGATGAATCTGGTGGCAAACTAGATAGTATAAAGGGAGAAATAGAACTAAGTCATGTTAGCTTTAAGTATCCATCTAGGCCGGATATACAAATTTTCCGAGACCTTAGCATGACTATCCATTCTGGCAAGACTGTGGCCCTTGTTGGTGAAAGTGGAAGTGGGAAATCCACAGTGATTGCCTTGTTGCAAAGATTTTATGACCCTGATGCAGGTCAAATTACAATTGATGGTATAGAAATTCAGAAATTGCAACTAAAGTGGTTAAGGCAGCAAATGGGCCTTGTAAGCCAAGAGCCAATCTTGTTCAATGACACTATCCGTGCCAATATTGCCTATGGAAAGGAAGGCAATGCAACTGAAGCAGAAATCATAACTGCAGCAGAATTAGCCAATGCCCATAGATTTATTAGTGGCTTAGAACAGGGTTATGATACAGTAGTGGGAGAAAGGGGAATCCTACTATCTGGTGGGCAGAAACAACGAGTAGCCATTGCACGAGCAATCATAAAAAGTCCAAATATATTGCTCCTAGATGAGGCCACAAGTGCACTAGACGTTGAGTCAGAGAGAGTTGTTCAAGATGCATTAGACAAAGTGATGGTGAACAGGACAACTGTGATTGTGGCACATCGTCTATCTACAATTAAAAGTGCTGATGTGATTATAGTACTTAAAAATGGAGTTATAGTGGAGAAAGGAAGGCATGAGACTCTCATTAGCATTAAGGATGGATATTATGCTTCCCTAGTCCAACTTCATACAACTGCAACTACTGTATAA 3765 0.412 MRHKNGGTRKHDETSTKGDKSRQKEKVELVPFHRLFSFADSIDILLMIVGTIGAIGNGLSMPILSLLLGQMVNSFGNNQFSPDIVNQVSKVCLKFVCLGIGNAVAAFLQVACWMITGERQAARIRGLYLKTILRQNVAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGKFLQLIATFIGGYVVAFIKGWLLTVVLLSFLPLIVASGIAMTFIIGKMASRRQNAYAKAAHVAEQTIGSIKTVASFTGEKQAVSSYRRYLAGAYKSGVYEGFVFGMGHGMIMLVVFCTFALAVWFGAKMIIEKGYNGGQVINIIIAVLTASMSLGQASPSMSAFAAGQAAAYKMFQTIERKPEIDAYDPNGKILEDIHGDIDIKDVYFSYPTRPEELVFNGFSIHIPSGTTTALVGESGSGKSTIISLIERFYDPLAGEVLIDSINMKDFQLRWIRGKIGLVSQEPALFASSIKDNIAYGKEGATIQEIRVALELANAAKFIDRLPQGLDTMVGDHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAQSQRTVQEALDRVMVNRTTVVVAHRLSTVRNADMIALIHRGKMIEKGTHVELLKDPGGAYSQLIRLQEVNNESKESADNQNKRKLSTESRSSLGNSSRHTFSVSSGLPTGVDVPKAGNEKLHPKEKSQEVPLLRLASLNKPEIPALLMGCVAAIANGAILPIYGVLLSSVIKTLYEPFPDMKKDSKFWSLMFVVLGIASLMAIPARCYFFSVAGSRLIQRIRLVCFEKLINMEVGWFEEPEHSIGAIGARLSTDAAFVRALVGDALGLLIQSISTALTGLIVAFIASWQLALIVVIIAPLMGMNGYVQIKFMKGFSADAKMMYEEASQVASDAVGSIRTIASFCAEEKVMELYSKKCEGPVKTGIQQGLISGIGFGVSFFLLFSVYATTFHAGARFVDAGMASFSDVFRVFFALTMTAIGISRSSSLAPDSSKGKTATASIFEIIDQKSKIDPSDESGGKLDSIKGEIELSHVSFKYPSRPDIQIFRDLSMTIHSGKTVALVGESGSGKSTVIALLQRFYDPDAGQITIDGIEIQKLQLKWLRQQMGLVSQEPILFNDTIRANIAYGKEGNATEAEIITAAELANAHRFISGLEQGYDTVVGERGILLSGGQKQRVAIARAIIKSPNILLLDEATSALDVESERVVQDALDKVMVNRTTVIVAHRLSTIKSADVIIVLKNGVIVEKGRHETLISIKDGYYASLVQLHTTATTV* 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0473 1254 MobiDBLite consensus disorder prediction 627 648 - -
Lja1g0473 1254 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 19 1250 - -
Lja1g0473 1254 ProSitePatterns ABC transporters family signature. 509 523 IPR017871 GO:0005524
Lja1g0473 1254 PANTHER - 19 1250 - -
Lja1g0473 1254 Pfam ABC transporter transmembrane region 687 959 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g0473 1254 Pfam ABC transporter transmembrane region 47 321 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g0473 1254 MobiDBLite consensus disorder prediction 612 626 - -
Lja1g0473 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 370 606 IPR003439 GO:0005524
Lja1g0473 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1009 1246 IPR003439 GO:0005524
Lja1g0473 1254 Pfam ABC transporter 389 537 IPR003439 GO:0005524
Lja1g0473 1254 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 331 - -
Lja1g0473 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 608 IPR027417 -
Lja1g0473 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 335 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g0473 1254 Gene3D ABC transporter type 1, transmembrane domain 976 1251 IPR036640 GO:0005524|GO:0016021
Lja1g0473 1254 CDD ABC_MTABC3_MDL1_MDL2 1009 1247 - -
Lja1g0473 1254 ProSitePatterns ABC transporters family signature. 1149 1163 IPR017871 GO:0005524
Lja1g0473 1254 MobiDBLite consensus disorder prediction 7 25 - -
Lja1g0473 1254 MobiDBLite consensus disorder prediction 1 25 - -
Lja1g0473 1254 SMART AAA_5 1036 1229 IPR003593 -
Lja1g0473 1254 SMART AAA_5 397 589 IPR003593 -
Lja1g0473 1254 CDD ABC_MTABC3_MDL1_MDL2 370 608 - -
Lja1g0473 1254 CDD ABC_6TM_Pgp_ABCB1_D2_like 677 992 - -
Lja1g0473 1254 Gene3D ABC transporter type 1, transmembrane domain 667 975 IPR036640 GO:0005524|GO:0016021
Lja1g0473 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1002 1246 IPR027417 -
Lja1g0473 1254 Gene3D - 999 1249 IPR027417 -
Lja1g0473 1254 Gene3D - 360 609 IPR027417 -
Lja1g0473 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 688 974 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g0473 1254 Pfam ABC transporter 1028 1177 IPR003439 GO:0005524
Lja1g0473 1254 Gene3D ABC transporter type 1, transmembrane domain 34 624 IPR036640 GO:0005524|GO:0016021
Lja1g0473 1254 SUPERFAMILY ABC transporter transmembrane region 675 993 IPR036640 GO:0005524|GO:0016021
Lja1g0473 1254 MobiDBLite consensus disorder prediction 611 667 - -
Lja1g0473 1254 SUPERFAMILY ABC transporter transmembrane region 33 354 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0473 Lja-Chr1 4230757 4244174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0473 23 1248 Calmodulin-binding Proteins AT2G36910 43.245 0.0 1021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0473 K05658 - gmx:100802547 1982.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0473 1 4230757 4244174 Lja5g1288 5 12969773 12976800 PCT