Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0471 ATGGAGGATGATGAAGCTTTTCCCTTAATCCACCACTGCGATTCACCCTTCTTCCCTTCTTCCAAATCCTTCAACGATGTCACCACCTTGCACCAACCACCGCCCCCACGACCTCGCAAACCAGAGATTCAATCCTCCACTTCTGAACCATTTCCTCCGCCGAAGTTGAAGAAGAAGCTCAGTCGCTGCAAAACCGCACCTGCTTTGTTCGTCATGCGAGACCTCAAACCCAAACCACCTGAACTTCCCAAACCCCAAACCAGTTCCATAATCAGACAAGGAATCTGGTTGCTCATTCTTTACCTCTCTGTTGGAGTTGCCATATACTCCTTCAACAGAGACCGTTTTTCTGGGATTGAAACTCACCCTGTTGTTGATGCCCTTTACTTTTGCATAGTCACCATGTGCACTATAGGTTATGGGGATATAGCTCCATTGACCCCAGTCACAAAGGTCTTTGCCTGCGTTTTTGTGTTGGTAGGGTTTGGATTCATAGACATACTCCTTAGTGGGCTTGTCAATTTTGTCCTTGATTTGCAGGAACATGTCATCCTCACTGGGCTTCAGATGGGTGGGAGGGCGGGTTTCTCGGCGAGGGATTACATTGTTGATGTGGCCAAAGGGAGGATGAGGATCAGGTTGAAGGTTGGTTTGGCACTTGGTGTGGTGGTTTTGTGTATTGGGATTGGGTGTTTGGTGCTGTATTTTGTGGAGGGTTTGGATTGGGTTGATTCTATTTATTTGTCTGTCATGTCTGTTACTACGGTTGGGTATGGGGATAGAGCCTTCAAGACGCTTCCGGGGCGGTTGTTCGCCGCGGTTTGGCTCCTGTTTTCTACATTGATGGTGGCAAGGGCTTTCCTCTATTTGGCTGAGGCTAGAATCGATAAGAGGCACCGGAGAATGGCGAAGAATGTGCTGCAGAGAGATATCACTGTTGAGGATTTGATTGCTGCTGATATCAACCACACTGGTTTTATCAGTAAGTCAGAGTATGTAATATTCAAGCTCAAAGAGATGGGTAAAATACAGGAAAAAGATGTGATGCAAATTTGTGATCAATTCGGGAAGCATGACCCCTCTAACCGTGGGAAGATAACATTACCTCATCTCTTAGGACCTGTTTGA 1128 0.4672 MEDDEAFPLIHHCDSPFFPSSKSFNDVTTLHQPPPPRPRKPEIQSSTSEPFPPPKLKKKLSRCKTAPALFVMRDLKPKPPELPKPQTSSIIRQGIWLLILYLSVGVAIYSFNRDRFSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPVTKVFACVFVLVGFGFIDILLSGLVNFVLDLQEHVILTGLQMGGRAGFSARDYIVDVAKGRMRIRLKVGLALGVVVLCIGIGCLVLYFVEGLDWVDSIYLSVMSVTTVGYGDRAFKTLPGRLFAAVWLLFSTLMVARAFLYLAEARIDKRHRRMAKNVLQRDITVEDLIAADINHTGFISKSEYVIFKLKEMGKIQEKDVMQICDQFGKHDPSNRGKITLPHLLGPV* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0471 375 PRINTS Two pore domain K+ channel signature 254 263 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lja1g0471 375 PRINTS Two pore domain K+ channel signature 133 161 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lja1g0471 375 Pfam Ion channel 224 292 IPR013099 -
Lja1g0471 375 Pfam Ion channel 97 176 IPR013099 -
Lja1g0471 375 ProSitePatterns EF-hand calcium-binding domain. 320 332 IPR018247 -
Lja1g0471 375 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 53 371 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lja1g0471 375 PANTHER TWO-PORE POTASSIUM CHANNEL 4-RELATED 53 371 - -
Lja1g0471 375 Gene3D - 200 318 - -
Lja1g0471 375 Gene3D - 81 184 - -
Lja1g0471 375 SUPERFAMILY Voltage-gated potassium channels 87 176 - -
Lja1g0471 375 SUPERFAMILY Voltage-gated potassium channels 206 314 - -
Lja1g0471 375 MobiDBLite consensus disorder prediction 15 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0471 Lja-Chr1 4220616 4223015 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0471 58 373 Ion Channels AT4G01840 70.062 2.58e-159 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0471 K05389 - gmx:100801488 550.436