Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0469 ATGAAGGGGAAAATAATTATCTCCGCTGTTTCTCTCATCCTCGTAGTAGGAGTTGCCATTGGCATTGTCGTCTCTGTTCATAACAATAATGCAGACCCTGAGGTTCAAACTCAACAGAGGTCTGTCAGGACCATTTGCCAAAACACCGATGACCAGAAGCTCTGCCATGATACCCTCAGCTCCGTGAAAGGGGTTGATGCCGCCGATCCAAAGGCTTACATCGCGACTGCGGTGAAAGCTGCCAGTGACAGCGTCATCAAAGCCTTCAACATGAGCGACCGACTCACAACCGAGTACGGGAACAAGGACCACGGTATCAAGATGGCCCTTGACGATTGCAAGGACCTCTTGCAATCCGCCATGCAAAGTCTTGACCTTTCCACGACCCTGGTTCGCGACAACAACATCCAAGGCGTGCACAACCAGATCCCCGATTTCAGGAATTGGTTGGGCGCTGTTATCTCGTACCAACAAGCATGCATGGAAGGTTTTGACAATGACAAGGACGGTGAGAAGCAGATCAAGGAGCAACTCCATACCGAGAGCATGGACCATGTTCAGAGGATCACCGCCATCACCCTTGACATTGTCACTAGCATGACCAAAATTCTTGAGCAGTTCAACTTGAAGTTGGATCTCAAACCTGCTTCTCGTCGTCTTCTCAGTGAGGATGTTGACAATGAAGGGTACCCTTCATGGTTCTCTGCTTCTGACCGCAAGCTTTTGTCTGGGCTTCAGAGAAGAGGGTGGAGGTCACGTGTTAAGCCTAACGTCGTGGTTGCCAAGGATGGTTCTGGTCAATTCAAGAGCGTCGAAGCTGCTATTGCCTCATACCCCAAGGGATTTAAGGGAAGATATGTTATTTATGTTAAGGCTGGTGTGTATAATGAGTACATCACTGTTCCCAAGAGCGCTGCTAACATTCTCATGTACGGTGATGGCCCTACAAAGACCATCATCACCGGTCGCAAGAACTTTGCTGATGGTGTGAAGACCATGCAAACTGCCACCTTCGCCAACCAGGCACCTGGATTCATTGCCAAGGCCATTACCTTCGAGAACACCGCCGGTCCCAACGGTCACCAAGCTGTGGCATTGAGAAACCAAGGAGATCAGTCAGCTTTCGTGGGCTGCCACATCTTGGGTTACCAAGACACCTTGTACGTTCAGACCAACAGGCAATTCTACCGCAACTGTGTCATCTCCGGTACCATTGACTTTATCTTTGGAACCTCCCCCACCTTGATCCAACACTCCATCATCGTCGTGAGGAAGCCCAATGACAACCAGTTCAACACTGTGACCGCAGACGGTACACCAACAAAGAACATGCCCACAGGTATTGTGATCCAAGATTGTGAGATTGTCCCAGAAGCCGCATTGTTCCCTGTGAGGTTCAAGATCAAGTCTTACCTCGGAAGGCCATGGAAGGAGTACTCAAGGACCGTGGTGATGGAATCTACTTTGGGTGACTTCATTCATCCAGAGGGATGGTTCCCATGGGCTGGAAGCTTTGCCCTTGACACCTTGTACTATGCTGAGCATGCCAACACTGGACCCGGTGCCAACACTGCAGGAAGGATCAAGTGGAAGGGTTACCGTGGTGTCATTAGCAGGGCTGAGGCTACCCAATTCACAGCCGGTGAGTTCCTTAAGGCTGGACCTCGATCTGGCCTTGATTGGATCAAGGCTCTTCATGTTCCTCACTACCTTGGCTTCAAACATTAA 1728 0.5012 MKGKIIISAVSLILVVGVAIGIVVSVHNNNADPEVQTQQRSVRTICQNTDDQKLCHDTLSSVKGVDAADPKAYIATAVKAASDSVIKAFNMSDRLTTEYGNKDHGIKMALDDCKDLLQSAMQSLDLSTTLVRDNNIQGVHNQIPDFRNWLGAVISYQQACMEGFDNDKDGEKQIKEQLHTESMDHVQRITAITLDIVTSMTKILEQFNLKLDLKPASRRLLSEDVDNEGYPSWFSASDRKLLSGLQRRGWRSRVKPNVVVAKDGSGQFKSVEAAIASYPKGFKGRYVIYVKAGVYNEYITVPKSAANILMYGDGPTKTIITGRKNFADGVKTMQTATFANQAPGFIAKAITFENTAGPNGHQAVALRNQGDQSAFVGCHILGYQDTLYVQTNRQFYRNCVISGTIDFIFGTSPTLIQHSIIVVRKPNDNQFNTVTADGTPTKNMPTGIVIQDCEIVPEAALFPVRFKIKSYLGRPWKEYSRTVVMESTLGDFIHPEGWFPWAGSFALDTLYYAEHANTGPGANTAGRIKWKGYRGVISRAEATQFTAGEFLKAGPRSGLDWIKALHVPHYLGFKH* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0469 575 TIGRFAM PME_inhib: pectinesterase inhibitor domain 18 199 IPR006501 GO:0004857
Lja1g0469 575 CDD PMEI-like_3 44 202 - -
Lja1g0469 575 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Lja1g0469 575 Gene3D - 251 573 IPR012334 -
Lja1g0469 575 PANTHER PECTINESTERASE 3 573 - -
Lja1g0469 575 Pfam Pectinesterase 257 552 IPR000070 GO:0030599|GO:0042545
Lja1g0469 575 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Lja1g0469 575 PANTHER PECTINESTERASE 3 573 - -
Lja1g0469 575 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 201 IPR035513 -
Lja1g0469 575 Pfam Plant invertase/pectin methylesterase inhibitor 41 196 IPR006501 GO:0004857
Lja1g0469 575 SUPERFAMILY Pectin lyase-like 253 554 IPR011050 -
Lja1g0469 575 SMART PMEI_2 37 196 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0469 Lja-Chr1 4167949 4169902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0469 42 573 Carbohydrate Esterase AT2G26450 40.748 1.36e-136 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0469 K01051 - gmx:100815015 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0469 1 4167949 4169902 Lja5g1278 5 12855817 12862873 PCT
Lja5g1279 5 12868550 12870520 Lja1g0469 1 4167949 4169902 PCT