Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0465 ATGGAGAAGGAGATATTGATGATGGATAGGAAGAAAAATAGGAACGCTGGAAGAATCATGGGTTGTTTCAGCTGTTGTGAAGAAGATGACTTCCACAGGACTGCTGAAACTGGGGGACCATATATGGTGAAAAACTCAGGAAATGATGGAAATCACCATGCTTCTGAAACCGCAAAGCAGGGTGCTCAAACTGTTAAAATTCAGCCCATTGAAGTTCCTGAAATACCAGTGGATGAACTCAAAGAAATTACAGATACCTTTGGAGAGAGTTCTCTGATTGGAGAGGGATCCTATGGAAGAGTATATTATGGCGTTCTTAAGAGTGAGCAGGCTGCAGCAATCAAGAAATTAGATGCCAGTAAACAGCCTGATAATGAATTTTTAGCCCAGGTTTCAATGGTTTCACGACTGAAGCATGACAATTTTGTCCAATTGCTTGGTTATTGTGTTGACGGAAACTCTCGAATTCTTGTTTATGAGTTTGCATCTAATGGGTCTCTTCATGATATTTTACATGGCAGAAAAGGTGTTAAAGGAGCACAGCCTGGTCCTGTTCTGACATGGGCACAGCGAGTTAAAATTGCTGTAGGGGCTGCAAAAGGGCTTGAGTACTTGCACGAGAAGGCTGATCCCCACATTATCCACCGGGACATCAAGTCAAGCAACGTGCTAATCTTTGATGATGATGTTGCTAAAATTGCAGATTTTGATTTGTCAAATCAGGCTCCTGACATGGCAGCACGTCTTCATTCCACCCGTGTCCTTGGAACCTTCGGTTATCATGCACCTGAATATGCAATGACTGGGCAATTGAATGCTAAGAGTGACGTATACAGCTTTGGTGTTGTCCTTCTGGAACTTTTGACTGGAAGGAAGCCTGTTGATCATACACTACCACGTGGGCAGCAGAGCCTGGTTACTTGGGCTACACCAAAACTAAGTGAGGATAAAGTCAGACAGTGTGTAGATGCAAGACTAGGAGGAGAATACCCACCCAAAGCTGTTGCAAAGTTGGCTGCCGTTGCTGCACTGTGCGTGCAATATGAAGCTGATTTCAGACCAAACATGAGCATTGTAGTCAAGGCTCTTCAGCCTTTGTTGAATGCAAGGCATGGACCTGCTGGTGACGCACCAAACTAA 1140 0.4412 MEKEILMMDRKKNRNAGRIMGCFSCCEEDDFHRTAETGGPYMVKNSGNDGNHHASETAKQGAQTVKIQPIEVPEIPVDELKEITDTFGESSLIGEGSYGRVYYGVLKSEQAAAIKKLDASKQPDNEFLAQVSMVSRLKHDNFVQLLGYCVDGNSRILVYEFASNGSLHDILHGRKGVKGAQPGPVLTWAQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDARLGGEYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQPLLNARHGPAGDAPN* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0465 379 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 20 376 - -
Lja1g0465 379 SUPERFAMILY Protein kinase-like (PK-like) 66 363 IPR011009 -
Lja1g0465 379 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 20 376 - -
Lja1g0465 379 Pfam Protein tyrosine and serine/threonine kinase 92 363 IPR001245 GO:0004672|GO:0006468
Lja1g0465 379 Gene3D Phosphorylase Kinase; domain 1 47 161 - -
Lja1g0465 379 SMART serkin_6 87 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0465 379 ProSiteProfiles Protein kinase domain profile. 87 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0465 379 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Lja1g0465 379 Gene3D Transferase(Phosphotransferase) domain 1 162 373 - -
Lja1g0465 379 CDD STKc_IRAK 93 366 - -
Lja1g0465 379 PIRSF ILK 40 371 - -
Lja1g0465 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0465 Lja-Chr1 4147062 4152655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0465 79 370 Receptor kinase-like Gene Family AT3G58690 50.340 3.90e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Lja1g0465 PK_Tyr_Ser-Thr 7.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0465 K13436 - gmx:100499642 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0465 1 4147062 4152655 Lja1g0465 1 4147062 4152655 ECH
Lja1g0465 1 4147062 4152655 Lja5g1277 5 12849451 12855163 PCT