Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0464 ATGGAAGCTAGATTTGGCGCCGAATCTCTGTACGATCCGAGGGTTGTTTTGGGGAACAGGTCGTCGACGATGGAGTGGGATTTGAATAGTTGGAAGTGGGACGGTGATCTTTTCATAGCCAGGAAGCTCACTCCGGTGCCGGAGCACCGTCAATTCCTGCCTCCTCTCCCTGGTTCATCCAACTCCAACACTTCCTCTTCCTGCTCCGATGAGGCGGATCTCAGGATTCGAAACGAAGGGGAGAGGAAGAGGAGGGTTATTCAGCATGAAGAGGATGCTGCTGGTACCCTTAGTTTGAAGCTTGGTGGTGGTAATCTTGCTACAATTTCTAGCTGGGAAGGGAGTAACGGGAAGAAAAGTAGAGTCGCCGGCGGAGGAGCTGCTTCGAATCGAGCCCTTTGTCAGGTGAAGGATTGCGGCGCAGATCTAACCGTCGCTAAAGATTATCACCGGCGTCATAAAGTTTGTGAGGTGCACTCCAAGGCTACTCAAGCCCTTGTGGGAAACGCTATGCAGCGCTTCTGCCAACAATGTAGTAGGTTTCACTTGCTTCAAGAGTTTGATGAGGGAAAGAGAAGCTGTCGGAGGCGTTTGGCGGGCCATAATAAACGGAGGAGGAAAACGAATCAAGATGCTGCTCCGAATGGAAGTTCACTAAATGATGATCAGACAAGTGGTTATTTGTTGATAAGTTTATTGAAGATACTTTCAAATATGCAGCAATCTGACAGGTCAAATCAAACAACAGATCAGGATCTGCTAACTCATCTTTTAAGAAGTCTTGCTAATCAGAATGGTGAACAAGGAGGCAAGAACTTGTCTAACCTTTTGCGGGAACAAGAGAATTTATTGAAAGAAGGGAGTTCATCTGGGAAAGCTGGGACGGTTTCCACTCTATTCACAAATGGTTCTCAAGGCTCCCCATCTGTTACTAGACAGCAGCAAACAGTTTCTATTAGTGAAATTCCCCATCAAGTGATGCATGCACAGGATGCTAGGGCTGCTGATCAACAAACCATGTCTTCTACAAAGCCTAGCATTTCAAACAGCCCTCCGGCTTACTCAGAAGCCAGAGATAGTACTGCTGGACAGACCAAGATGAATAACTTTGATCTGAATGACATATATATTGACTCAGATGATGGCATAGAAGACATAGAAAGGTTGCCTGTCTCTGCAAATCTGGCTACTAGCTCTCTTGATTATCCATGGATGCAACAGGATTCTCAGCAGTCAAGCCCACCTCAAACAAGTGGAAATTCAGATTCTGGATCTGCCCAGTCCCCTTCTAGTTCCAGTGGAGAAGCCCAGAGTCGCACGGATCGTATTGTTTTCAAACTCTTTGGTAAAGAACCAAGTGATTTTCCTCTTGTACTTAGATCACAGATTCTTGATTGGTTATCCCAAAGTCCTACTGATATTGAGAGCTATATACGGCCTGGTTGTATCATTTTGACTATTTATCTGCGTCAGGCTGAGGCTGTCTGGGAAGAGCTTTGCTATGATCTGACTTCCAGCTTGAATAGGCTTCTGGATGTCTCAGATGATCCTTTTTGGAGAACTGGATGGGTTCACATAAGGGTGCAACATCAGATAGCCTTCGTTTTCAATGGTCAGGTTGTTATAGATACATCCTTACCTTTCAGAAGTCACGATTATAGCAAGATTTTAAGTGTTAGTCCAATTGCTGTACCAGCATCGAAGACATCTCAATTTTCTGTTAAGGGTATCAACCTGAATCGCCCCGCCACTAGGTTACTGTGTGCTATAGAAGGGGATTATCTGGCATGTGAAGATGTTAATGAGTCTACAGATCAACACTCCAAGGATCTTGATGAGCTTCAGTGCATCCAGTTTTCATGTTCTGTCCCTGTGATGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGGTTGAGCAGCAGCTTTTTTCCTTTCATTATCGTGGAGGAGGATGTTTGCTCTGAAATCTGTGTGCTTGAGCCTTTACTAGAATTAAATGATACTGATCCAGATATTGAAGGGGCTGGAAAACTTAAAGCCAAATCTCAAGCCATGGATTTCATTCATGAAATGGGTTGGCTTCTCCACAGAAGCCAATTGAAATCTCGGATGGTTCACTTGAACTCTAGCGAAGATCTTTTTCCATTAAATCGATTCAATTCGCTATTGGATTTCTCTGTGGAACATGATTGGTGTGCAGTAGTTAAAAAACTGTTGAACCTCCTGCTTGATGGAGCTGTGCATACAGGAGATCACCTTTCCCTGTCTCTTGCACTTTCAGAGCTCGGCCTCCTTCATAAAGCTGTAAGGAGAAATAGCAGGAAATTGGTGGAGCTACTTTTGAGATATGTTCCTGAGAGTACTTCTGATAAACTAGGACCTGAAGACAAGGAACTTGTTGATAGAAAGAACCAGGTCTTCTTGTTTAGACCTGATGCTGCTGGTCCTGCTGGTTTGACACCACTCCACATAGCAGCTGGGAAAGATGGTTCTGAGGATGTACTGGATGCTTTAACTAATGATCCTTGCATGGTGGGAGTTGAAGCATGGAAGACTGCTCGTGACAGCACTGGCTCCACACCTGAAGATTATGCACGTTTACGTGGGCATTATACTTACATTCACTTGGTGCAAAAGAAAATCAACAAGAGACAAGTAGGGTCTCATGTGGTTGTTGACATTCCCAACAATCTGACCAGGTTCAATGCAAACGAGAAACAAGATGAGTTGTTGTCCACTAGCTTTGAGATTGGAAAGGCTGAAGTCAAAAGTGTCCAAAAGCTCTGCAAACTTTGTGATCTTAAGTTATCTTGTAGAACTGCTGCAGGCAGGTCCTTGGTGTACAAACCTGCAATGCTGTCAATGGTGGCCGTGGCAGCAGTTTGTGTCTGTGTGGCTCTTCTGTTTAAAAGCTCACCAGAAGTTCTGTATATATTCCGACCCTTCAGGTGGGAATCGTTGGAGTTCGGGACAAGCTGA 2982 0.447 MEARFGAESLYDPRVVLGNRSSTMEWDLNSWKWDGDLFIARKLTPVPEHRQFLPPLPGSSNSNTSSSCSDEADLRIRNEGERKRRVIQHEEDAAGTLSLKLGGGNLATISSWEGSNGKKSRVAGGGAASNRALCQVKDCGADLTVAKDYHRRHKVCEVHSKATQALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNQDAAPNGSSLNDDQTSGYLLISLLKILSNMQQSDRSNQTTDQDLLTHLLRSLANQNGEQGGKNLSNLLREQENLLKEGSSSGKAGTVSTLFTNGSQGSPSVTRQQQTVSISEIPHQVMHAQDARAADQQTMSSTKPSISNSPPAYSEARDSTAGQTKMNNFDLNDIYIDSDDGIEDIERLPVSANLATSSLDYPWMQQDSQQSSPPQTSGNSDSGSAQSPSSSSGEAQSRTDRIVFKLFGKEPSDFPLVLRSQILDWLSQSPTDIESYIRPGCIILTIYLRQAEAVWEELCYDLTSSLNRLLDVSDDPFWRTGWVHIRVQHQIAFVFNGQVVIDTSLPFRSHDYSKILSVSPIAVPASKTSQFSVKGINLNRPATRLLCAIEGDYLACEDVNESTDQHSKDLDELQCIQFSCSVPVMNGRGFIEIEDQGLSSSFFPFIIVEEDVCSEICVLEPLLELNDTDPDIEGAGKLKAKSQAMDFIHEMGWLLHRSQLKSRMVHLNSSEDLFPLNRFNSLLDFSVEHDWCAVVKKLLNLLLDGAVHTGDHLSLSLALSELGLLHKAVRRNSRKLVELLLRYVPESTSDKLGPEDKELVDRKNQVFLFRPDAAGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGVEAWKTARDSTGSTPEDYARLRGHYTYIHLVQKKINKRQVGSHVVVDIPNNLTRFNANEKQDELLSTSFEIGKAEVKSVQKLCKLCDLKLSCRTAAGRSLVYKPAMLSMVAVAAVCVCVALLFKSSPEVLYIFRPFRWESLEFGTS* 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0464 993 SUPERFAMILY SBT domain 132 212 IPR036893 GO:0003677|GO:0005634
Lja1g0464 993 MobiDBLite consensus disorder prediction 284 366 - -
Lja1g0464 993 Gene3D - 125 195 IPR036893 GO:0003677|GO:0005634
Lja1g0464 993 MobiDBLite consensus disorder prediction 55 71 - -
Lja1g0464 993 MobiDBLite consensus disorder prediction 405 438 - -
Lja1g0464 993 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 18 992 - -
Lja1g0464 993 Gene3D - 709 913 IPR036770 -
Lja1g0464 993 MobiDBLite consensus disorder prediction 284 323 - -
Lja1g0464 993 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 18 992 IPR044817 GO:0003677
Lja1g0464 993 MobiDBLite consensus disorder prediction 332 366 - -
Lja1g0464 993 MobiDBLite consensus disorder prediction 50 74 - -
Lja1g0464 993 ProSiteProfiles Zinc finger SBP-type profile. 131 208 IPR004333 GO:0003677
Lja1g0464 993 Pfam SBP domain 134 207 IPR004333 GO:0003677
Lja1g0464 993 MobiDBLite consensus disorder prediction 198 220 - -
Lja1g0464 993 SUPERFAMILY Ankyrin repeat 724 878 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0464 Lja-Chr1 4134606 4142366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0464 18 993 SBP-box Gene Family AT3G60030 55.245 0.0 970
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lja1g0464 SBP 1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0464 - - gmx:100809806 1504.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0464 1 4134606 4142366 Lja1g0464 1 4134606 4142366 ECH