Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0460 ATGCTGCAGGCCTATTCTACGGTTGGAACACCTGACTATATTGCCCCTGAAGTTCTGCTGAAGAAAGGATATGGCATGGAATGTGATTGGTGGTCTTTGGGAGGTATAATGTATGAAATGCTAGTAGGATATCCGCCCTTTTATTCAGATGAACCAATGCTGACTTGTAGAAAGATAGTAAATTGGAGAACTCATTTAAAATTTCCAGAAGAAGCTAAACTATCTCCAGAGGCAAAGGATCTTATTAGCAGACTACTTTGTAATGTGCAGCAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAGGCTCATCCATGGTTCAAAGGCATTGAATGGGACAAATTGTACCAAATGAAAGCTGCTTTTATTCCTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAGGAGGCGGACAACCAAACTCAACCTTCCTCAAAAGCAGGCCCATGGAGAAAGATGCTGTCATCTAAAGATGTTAACTTCGTCGGTTACACATACAAGAACTTTGAAATCGTGAATGATGATCAACTACATGGAATTGCTGAATTAAAGAAGAAGAGCACAAAAACTAAACGGCCATCCATCAAGACCCTGTTCGATGATGAATCGGCTACGGGTGCCAAGCAACCTCCCAAAGGAAGCTTCTTAAATCTCTTACCAACTCAACTGGAAGTTCCAGAGAAGAGTGAATCACAATGA 711 0.4093 MLQAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGGIMYEMLVGYPPFYSDEPMLTCRKIVNWRTHLKFPEEAKLSPEAKDLISRLLCNVQQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEEADNQTQPSSKAGPWRKMLSSKDVNFVGYTYKNFEIVNDDQLHGIAELKKKSTKTKRPSIKTLFDDESATGAKQPPKGSFLNLLPTQLEVPEKSESQ* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0460 236 MobiDBLite consensus disorder prediction 189 236 - -
Lja1g0460 236 ProSiteProfiles Protein kinase domain profile. 1 107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0460 236 SMART serkin_6 1 107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0460 236 Pfam Protein kinase C terminal domain 126 170 IPR017892 GO:0004674|GO:0005524|GO:0006468
Lja1g0460 236 Gene3D Transferase(Phosphotransferase) domain 1 6 125 - -
Lja1g0460 236 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 234 - -
Lja1g0460 236 Pfam Protein kinase domain 5 107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0460 236 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 3 234 - -
Lja1g0460 236 SUPERFAMILY Protein kinase-like (PK-like) 4 158 IPR011009 -
Lja1g0460 236 Gene3D Phosphorylase Kinase; domain 1 126 136 - -
Lja1g0460 236 SMART pkinase_C_6 108 172 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lja1g0460 236 ProSiteProfiles AGC-kinase C-terminal domain profile. 108 180 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0460 Lja-Chr1 4073480 4085913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0460 4 234 AGC Kinase Gene Family AT3G23310 80.087 2.91e-139 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Lja1g0460 Pkinase 5.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0460 K08790 - mnt:21404309 449.129