Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0458 ATGGCATCAGGGGTTGTGCCACCTGCTTCTGGATTCACAGATATGAACACAAGTTCAGTTGTTGGGGTTGAAAGGTTGCCCCATGAATTGAATGTCATGAAAATCAGGGATGACAAGGAAATGGAAGCCACTGTGGTAGATGGAACTGGAACAGAAACTGGACATATAATTGTCACTACCATTGGTGGTAAAAATGGCCAGCCTAAACAGACAATAAGCTACATGGCTGAGCGTGTTGTTGGAAATGGGTCCTTTGGGGTAGTTTTCCAGGCAAAGTGCTTGGAGACTGGTGAAACTGTGGCAATTAAGAAGGTTCTTCAAGATAAGAGATACAAGAACCGTGAATTGCAAACCATGCGCCTTCTGGACCACCCTAATGTTGTATCTTTGAAGCATTGTTTCTTTTCTACAACTGAAAAGGATGAACTATATCTCAATCTTGTGCTTGAATACGTTCCTGAGACTGTCAATCGGGTCATCAGACACTACAACAAAATGAATCAAAGAATGCCATTGATATATGTCAAACTTTATTCTTACCAGATTTTGAGAGCACTTGCTTATATTCACAACAGCATTGGAGTGTGTCACAGGGATATAAAACCTCAAAATTTACTGGTCAATCCTCACACCCACCAGTTGAAGATATGTGACTTTGGAAGTGCTAAAGTCTTGGTTAAAGGTGAGCCGAACATATCTTACATCTGCTCTAGGTACTATAGAGCTCCTGAGCTTATATTTGGTGCAACGGAGTACACCACAGCCATTGACATCTGGTCAGCTGGTTGTGTACTTGGTGAACTGTTGCTTGGCCAGCCGCTTTTTCCTGGTGAGAGTGGAGTAGACCAGCTTGTGGAAATTATCAAGGTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACACAGAGTTTAAGTTTCCTCAAATTAAAGCTCATCCATGGCATAAGATCTTTCACAAGCGAATGCCACCTGAGGCTGTGGATCTTGTCTCAAGACTTTTGCAATACTCTCCAAATCTTCGAAGCACAGCTTTGGAGGCTCTGGTTCATCCATTCTACGATGAGCTGCGTGAGGCAAATACCCGGTTGCCAAATGGCCGTTTCCTTCCTCCACTATTTAACTTCAAAGCCAATGAGCTTAAAGGAGTAGCAGCTGAGATGCTTGTGAAGCTGATTCCACCTCATGCAAGAAAGCAGTGTGCCTTGTTTGGGTCATAA 1233 0.429 MASGVVPPASGFTDMNTSSVVGVERLPHELNVMKIRDDKEMEATVVDGTGTETGHIIVTTIGGKNGQPKQTISYMAERVVGNGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVNRVIRHYNKMNQRMPLIYVKLYSYQILRALAYIHNSIGVCHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSTALEALVHPFYDELREANTRLPNGRFLPPLFNFKANELKGVAAEMLVKLIPPHARKQCALFGS* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0458 410 SMART serkin_6 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0458 410 Gene3D Phosphorylase Kinase; domain 1 58 153 - -
Lja1g0458 410 Pfam Protein kinase domain 74 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0458 410 Gene3D Transferase(Phosphotransferase) domain 1 154 402 - -
Lja1g0458 410 SUPERFAMILY Protein kinase-like (PK-like) 73 382 IPR011009 -
Lja1g0458 410 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 1 408 - -
Lja1g0458 410 ProSitePatterns Protein kinases ATP-binding region signature. 80 104 IPR017441 GO:0005524
Lja1g0458 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Lja1g0458 410 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 408 - -
Lja1g0458 410 CDD STKc_GSK3 69 361 IPR039192 -
Lja1g0458 410 ProSiteProfiles Protein kinase domain profile. 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0458 Lja-Chr1 4057473 4061490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0458 74 385 MAP Kinase Gene Family AT1G73670 37.805 1.48e-54 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lja1g0458 Pkinase 4.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0458 K00924 - gmx:100788046 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0458 1 4057473 4061490 Lja1g0458 1 4057473 4061490 ECH
Lja1g0458 1 4057473 4061490 Lja5g1266 5 12707330 12711270 ECH