Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0441 ATGTCTTGGGATGCTACTGATAATGTTCGAAGAGGCAGAGCAGAGACAAGAAATCCAATCCAGGGCAATTCAGAGTTAACGAAGCTGGAGATTCACAACGACCAACCGGAGCAGCAGCAGCAATGGCTCAATTTCAACGGAGACCCTTATCCTCATCCTCCTCCTCCCCATGATCACCACCTTCCTCGTCTTCCCCGCAAACGCCCTTGGCAGCAGCACTCCAACCCAGGATTCCCTCCTCCTGATCAAGCTGATGGTCATGTAAAAGTTTATGTTGCCCCAGTTCCGAGAACAGCAACCGAGGCTGATGTCCGCATTGTGTTCCAAGGATTTGGAAATATTGTGGAGGTTGTTCTCTTAAAGGACAAGAGAACTGGTATGCGACAAGGAAGTTGTTTTGTGAAATACTCAACATTCAGTGAAGCTGACCGGGCTATTAAGGCTTTAAACAATCAGTATACATTTCTTGGGGAATCATGTCCTGTTGTTGTCAGATTTGCTGATCGACGTGAGCGTCTTGGGGTTCGAGGTCCCTGCCGAAACTTGGAAAAGAAAGACCCTTCAGAAGAGGCGGTACTG 579 0.4819 MSWDATDNVRRGRAETRNPIQGNSELTKLEIHNDQPEQQQQWLNFNGDPYPHPPPPHDHHLPRLPRKRPWQQHSNPGFPPPDQADGHVKVYVAPVPRTATEADVRIVFQGFGNIVEVVLLKDKRTGMRQGSCFVKYSTFSEADRAIKALNNQYTFLGESCPVVVRFADRRERLGVRGPCRNLEKKDPSEEAVL 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0441 193 SMART rrm1_1 89 165 IPR000504 GO:0003723
Lja1g0441 193 MobiDBLite consensus disorder prediction 17 46 - -
Lja1g0441 193 PANTHER RNA BINDING PROTEIN 66 173 - -
Lja1g0441 193 PANTHER FLOWERING TIME CONTROL FCA-LIKE PROTEIN 66 173 - -
Lja1g0441 193 Gene3D - 80 174 IPR012677 -
Lja1g0441 193 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 169 IPR000504 GO:0003723
Lja1g0441 193 SUPERFAMILY RNA-binding domain, RBD 54 175 IPR035979 GO:0003676
Lja1g0441 193 MobiDBLite consensus disorder prediction 1 86 - -
Lja1g0441 193 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 155 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0441 Lja-Chr1 3900325 3904272 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0441 64 171 Eukaryotic Initiation Factors Gene Family AT2G23350 30.556 2.92e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0441 - K13207 gmx:100776162 179.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0441 1 3900325 3904272 Lja1g0441 1 3900325 3904272 ECH