Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0435 ATGTCTTGGGATGCTACTGATAATGTTCGAAGAGGCAGAGCAGAGACAAGAAATCCAATCCAGGGCAATTCAGAGTTAACGAAGCTGGAGATTCACAACGACCAACCGGAGCAGCAGCAGCAATGGCTCAATTTCAACGGAGACCCTTATCCTCATCCTCCTCCTCCCCATGATCACCACCTTCCTCGTCTTCCCCGCAAACGCCCTTGGCAGCAGCACTCCAACCCAGGATTCCCTCCTCCTGATCAAGCTGATGGTCATGTAAAAGTTTATGTTGCCCCAGTTCCGAGAACAGCAACCGAGGCTGATGTCCGCATTGTGTTCCAAGGATTTGGAAATATTGTGGAGGTTGTTCTCTTAAAGGACAAGAGAACTGGTATGCGACAAGGAAGTTGTTTTGTGAAATACTCAACATTCAGTGAAGCTGACCGGGCTATTAAGGCTTTAAACAATCAGTATACATTTCTTGGGGAATCATGTCCTGTTGTTGTCAGATTTGCTGATCGACGTGAGCGTCTTGAGGCGGTACTGGTGGATAAAGTTTTTGTTAATAATATCAACAGAGAAGCTTCATCTAAAGAAATTGAAGAAATATTTTCACCTTATGGGCATGTTGAAGATGTCTTCATTGCGACAAATCGTGGATATGCTTTTGTCAAATTTTCTAATAGAGAAATGGCGCTGGCAGCGATCAAAGGGTTGAATAGAACATACACGATGAGAGGTTGTGATCTTCCATTTATTGTTCGTTTTGCGGAACCTAAGAAACCCAAAACTGGAGAATCAAGGGGCAACTATGTATCTGGGAATGCAAATTTTGGTCCTTGTTCACAAGAATCAGTAGCTTGGCCACTGCCAAATTTTGGTGATCCCAATACTGGAGGGAATATTATGCCTATTGCCCCACATCATTCCACAGTTCTACACCCGCAAGTTGCTTCTAATATGCCAAACTGGCAACCTGGCCCTACTGTGGCACAACAGCCTTTTCTTCCCCAACAAGCACATTCACAGTTGGCTTCAATGCCTTTGCAGTCAATTCAAGCTCCAAACTTCCCTTCTCAACCATTTATTACTGAGGTGCAGCGACAGTCTCATTCAACAGATTCATCAATTCAAAATATAGAGCAGCAGCTAAGTTCTCAGGTTAGTGACTAA 1158 0.4404 MSWDATDNVRRGRAETRNPIQGNSELTKLEIHNDQPEQQQQWLNFNGDPYPHPPPPHDHHLPRLPRKRPWQQHSNPGFPPPDQADGHVKVYVAPVPRTATEADVRIVFQGFGNIVEVVLLKDKRTGMRQGSCFVKYSTFSEADRAIKALNNQYTFLGESCPVVVRFADRRERLEAVLVDKVFVNNINREASSKEIEEIFSPYGHVEDVFIATNRGYAFVKFSNREMALAAIKGLNRTYTMRGCDLPFIVRFAEPKKPKTGESRGNYVSGNANFGPCSQESVAWPLPNFGDPNTGGNIMPIAPHHSTVLHPQVASNMPNWQPGPTVAQQPFLPQQAHSQLASMPLQSIQAPNFPSQPFITEVQRQSHSTDSSIQNIEQQLSSQVSD* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0435 385 MobiDBLite consensus disorder prediction 17 46 - -
Lja1g0435 385 PANTHER RNA BINDING PROTEIN 66 375 - -
Lja1g0435 385 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 169 IPR000504 GO:0003723
Lja1g0435 385 Gene3D - 178 262 IPR012677 -
Lja1g0435 385 SUPERFAMILY RNA-binding domain, RBD 180 274 IPR035979 GO:0003676
Lja1g0435 385 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 155 IPR000504 GO:0003723
Lja1g0435 385 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 243 IPR000504 GO:0003723
Lja1g0435 385 SUPERFAMILY RNA-binding domain, RBD 55 172 IPR035979 GO:0003676
Lja1g0435 385 SMART rrm1_1 180 250 IPR000504 GO:0003723
Lja1g0435 385 SMART rrm1_1 89 165 IPR000504 GO:0003723
Lja1g0435 385 Gene3D - 80 177 IPR012677 -
Lja1g0435 385 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 254 IPR000504 GO:0003723
Lja1g0435 385 MobiDBLite consensus disorder prediction 362 385 - -
Lja1g0435 385 Coils Coil 372 385 - -
Lja1g0435 385 MobiDBLite consensus disorder prediction 1 86 - -
Lja1g0435 385 PANTHER FLOWERING TIME CONTROL FCA-LIKE PROTEIN 66 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0435 Lja-Chr1 3833917 3842738 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0435 90 304 Eukaryotic Initiation Factors Gene Family AT1G71770 25.833 2.40e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0435 K13207 - gmx:100776162 460.685