Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0432 ATGTCGAAGAGGAAGTTCGGGTTCGAAGGTTTCGGCATAAACCGCCAATCAACCTACAGTTTCGAGCGATCTCAACCTCCTCAGCGCCTCTACGTTCCTCCCTCTTCACGCCAAGGCCACGACAACTACGAGGACACTGATCTCGACCACATCGATTACGACGACAACAACAACGATGACGCCAGGGACGAAGGGAACAACAACGAAAACGAAAACGACGCCACAGCTACCACGGGAGGGGGCGAGGAGGAGGAAATCGATCCATTGGATGCATTCATGGAGGGGATTCATGAGGAGATGAAGGCGGCGCCGCCTCCGAAGCCGAAGGAGAAGGCGGAGGATAGGTATAAGGATGATGAGGATGATGATCCCATGGAGAGCTTTCTGAAGGCGAAGAAGGACTTGGGGTTGACGCTGGCGTCGGATGCGCTGCATGCTGGGTATGATTCTGATGAGGAGGTTTATGCTGCTGCAAAGGCTGTGGATGCTGGTATGGTAGAGTATGATTCTGATGATAACCCTATTGTTATTGATAAGAAGAAAATTGAGCCCATTCCTCCTCTGGATCACTCTTCCGTTGATTATGAGCCTTTTAGTAAGGATTTTTATGAAGAACCTCCTTCAATATCAGGTATGAGTGAACAAGATGTAACGGATTACAGAAAGAGTTTGGCTATTCGTGTATCTGGTTTTGATGTTCCTAAGCCCGTAAAAACATTTGAGGACTGTGGGTTCCCTCCCCCAGTTATGAGTGCTATAAAAAAGCAAGGTTATGAGAAGCCCACGTCTATACAATGCCAAGCTTTACCGGTTGTGCTTTCTGGCAGAGATATCATTGGTATAGCAAAAACTGGTTCTGGTAAAACTGCTGCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAACTTCAGAAGGAGGAGGGTCCTATAGGAGTGATATGCGCACCTACCAGAGAATTGGCGCAACAGATATATCTTGAGTCCAAGAAATTTGCAAAATCATATGGTATACGCGTCTCTGCTGTCTATGGTGGAATGTCAAAACTTGAGCAGTTCAAAGAACTCAAGGCAGGCTGTGAGATAGTTGTTGCTACCCCTGGCAGATTGATAGACATGCTAAAAATGAAGGCATTGACAATGACAAGAGCAACTTATCTGGTGCTTGATGAGGCTGATAGGATGTTCGATCTTGGATTTGAGCCACAAGTAAGGTCCATTGTTGGTCAGATTAGGCCAGACCGTCAAACTTCACTCTTTTCTGCAACAATGCCTCGTAAAGTTGAAAAGTTGGCCAGGGAAATCCTTTCTGACCCTGTTAGAGTAATAGTTGGGGAGGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTCAAGTGGTGCCTTCAGATTCTGAGAAATTGCCGTGGCTCCTAGAGAAGCTGCCTGAAACGATTGATCAAGGTGATACCTTAGTATTTGCTTCCAAGAAGGCCACTGTGGATGATATTGAGACACAATTGTCTCAGAGGGGCTTTAAGGTTGCTGCCCTACATGGTGATAAGGATCAAGCTTCTCGTATGGATATTTTACAGAAGTTTAAATCTGGCGTCTACCATGTGCTTATTGCAACTGATGTTGCTGCTCGTGGTCTTGACATCAAATCAATTAAAACAGTGGTAAACTTTGATATTGCAAAAGACATGGACATGCATGTCCATCGGATTGGAAGAACGGGCCGTGCTGGTGACAAGGAAGGAGTTGCATACACACTTATAACTCAGAAAGAAGCACGGTTCGCTGGTGAATTGGTTAATAGCTTAATTGCTGCTGGTCAGAATGTTTCCACGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCGAAACGCGATTCAAGAAAAGGAGGTGGGAAAAAAGGCAAAGGCAGAGGTGGTGGTGGGAGTGGCAGAGGCGTGCGTGGAGTGGATTTTGGTTTGGGCATTGGATATAATTCAGAGTCAAGTAGCACACCACCTAACACTGCTCCAAGTCGTTCTGCTGCTGTAAATTCTTTGAGGACAGGAATGATGTCGCAATTTAAAAGTAGCTTTGTTGCTGCATCCTCAAACTCTCAAAATCAAGGTTTCAGTAACAATAAAAACATGGCTGCTAACAAGAGGCCAACACTCGCTGGCTTTGTATCTGGTGGATCAATCGGTGGTGATATAAATAGACGTCAGTTTGTTGCTTCAACCAGTCCTGCTCAATCAGCTGTAAATTCCACTAGTCAGAGTTCTGGAGTAAATCCTAGTCAGACAAGCACGAACAGTTCTAAACCTAGAGAAAGGCGAAGGCCATCGGGTTGGGATAGATAG 2349 0.4555 MSKRKFGFEGFGINRQSTYSFERSQPPQRLYVPPSSRQGHDNYEDTDLDHIDYDDNNNDDARDEGNNNENENDATATTGGGEEEEIDPLDAFMEGIHEEMKAAPPPKPKEKAEDRYKDDEDDDPMESFLKAKKDLGLTLASDALHAGYDSDEEVYAAAKAVDAGMVEYDSDDNPIVIDKKKIEPIPPLDHSSVDYEPFSKDFYEEPPSISGMSEQDVTDYRKSLAIRVSGFDVPKPVKTFEDCGFPPPVMSAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAQQIYLESKKFAKSYGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMTRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTSLFSATMPRKVEKLAREILSDPVRVIVGEVGMANEDITQVVQVVPSDSEKLPWLLEKLPETIDQGDTLVFASKKATVDDIETQLSQRGFKVAALHGDKDQASRMDILQKFKSGVYHVLIATDVAARGLDIKSIKTVVNFDIAKDMDMHVHRIGRTGRAGDKEGVAYTLITQKEARFAGELVNSLIAAGQNVSTELMDLAMKDGRFRSKRDSRKGGGKKGKGRGGGGSGRGVRGVDFGLGIGYNSESSSTPPNTAPSRSAAVNSLRTGMMSQFKSSFVAASSNSQNQGFSNNKNMAANKRPTLAGFVSGGSIGGDINRRQFVASTSPAQSAVNSTSQSSGVNPSQTSTNSSKPRERRRPSGWDR* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0432 782 Gene3D - 203 446 IPR027417 -
Lja1g0432 782 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 666 - -
Lja1g0432 782 Pfam Helicase conserved C-terminal domain 471 578 IPR001650 -
Lja1g0432 782 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 469 618 IPR001650 -
Lja1g0432 782 MobiDBLite consensus disorder prediction 13 32 - -
Lja1g0432 782 CDD SF2_C_DEAD 456 588 - -
Lja1g0432 782 Gene3D - 447 622 IPR027417 -
Lja1g0432 782 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 45 666 - -
Lja1g0432 782 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 238 266 IPR014014 GO:0003724
Lja1g0432 782 SMART ultradead3 257 459 IPR014001 -
Lja1g0432 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 447 IPR027417 -
Lja1g0432 782 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 269 444 IPR014001 -
Lja1g0432 782 MobiDBLite consensus disorder prediction 621 650 - -
Lja1g0432 782 MobiDBLite consensus disorder prediction 90 123 - -
Lja1g0432 782 MobiDBLite consensus disorder prediction 736 768 - -
Lja1g0432 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 385 618 IPR027417 -
Lja1g0432 782 MobiDBLite consensus disorder prediction 55 69 - -
Lja1g0432 782 MobiDBLite consensus disorder prediction 1 123 - -
Lja1g0432 782 MobiDBLite consensus disorder prediction 728 782 - -
Lja1g0432 782 CDD DEADc_DDX42 249 444 - -
Lja1g0432 782 Pfam DEAD/DEAH box helicase 262 433 IPR011545 GO:0003676|GO:0005524
Lja1g0432 782 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 390 398 IPR000629 -
Lja1g0432 782 SMART helicmild6 497 578 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0432 Lja-Chr1 3810794 3814944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0432 238 594 Eukaryotic Initiation Factors Gene Family AT3G13920 36.415 1.32e-64 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0432 K12835 - gmx:100814854 1245.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0432 1 3810794 3814944 Lja1g0432 1 3810794 3814944 ECH