Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0427 ATGATACAAGGTTTTTCTAGACAAGGGAACCACAATTTATCTGGAATGGAATTGTTGGAAGAGATTCATCCTCTCCCTTCGGAAAGTGGAAAAGGAGCCAACTTGTTCCAAGATCTAAATCAGAAGCTGCAACAAGAATTCAACATGGAAAACATGATGTTAGAAGAGATCAACTTTGGCCCTTATCTGCAACCAACACAACCGTTTCAGGAAACTACAGGACCAAAGAATCAGGGAGCACTAACAAGTTCTATGCATATGCCACCATCTTTAGCATCCTTAGAGCTCCTGAGAAGCTATGGTAGCAGGTTCAAGATGCAAAATACAAGCAACTTAAGCAAAGGTAAAACTTGTTTAGCTCATCAGAAGATGTCAACTGTTGAAATAGTAAGAGAAGCTGGAGCAAGGTATGTCCAATACTCTTCCCATTGGAATGATAATTTTTGCATCCCTATGCACCCTTATGGATTGAAGTACCTTGGGAATTTGTCTGAGGAAGAAAATGGAGATGTGGAACTTGTTCAGTTTCTCCTTGCTGCAGCTGAGAGGGTAAGCTGCCAACAATTTGAACGTGCAAGCAGGTTACTCCTCCATTATCAATGGAATTCATCATCATATGCAAGTGGAAACACTGTTCAAAGAGTTGTCTTTCACTTCGCTGAAGCACTTAAAGAGCGAATAGACAGAGAAACAGGAAGGATTACAAAGGGTGCCATTGGACTTAAAGCATGCAAAACCAAGATAGAGGACACTGGAAAACGGTTAGCGAATTTTGCTGAGTCCTTGAACTTGACCTTTTCATATAAGCCTGTTCTAGTCACAGACATGGCAGAATTCAAAGAAGATCATTTGGAAGTTGAAGAGGATGAAGCTGTGGTTATTTACTCTCCTTATTTTCTAAGGACCATGATATCAAGGCCTGATTGTTTGGAAAACTTGATGCGGATTATAAGCAATATCAAACCATCTATAATGATAGTGCTTGAAGTGGAAGCAAACCATAATTCACCCTCCTTTGTGAATCGTTTCATTGAGGCAATGTTCTTCTACTCGGCTTTTCTTGATTGCTTATATACTTGCATAGAAGATGATGAGTGCAGAGTGATCACTGAAGCAATATTATCTGCAGGGATAAGAAACATTGTTGCTATGGAAGGAAGGGAAAGGACGGTTAGAAATGTGAAGATAGATGTTTGGAGAAGGTTCTTTGCAAGGTATAGAATGGTGGAGATTGGATTTAGTGAGTCATCTATGTACCAAGCTGATTTGGTTGCTAGAGAGTTTGCTATTGGGAAATTCTGCACTGTGGACAAGAATGGCAGGTCTATGATAGTGGGATGGAAGGGGACCCCAATGCATTCAATCTCAGCTTGGAGGTTTCTTTGA 1386 0.404 MIQGFSRQGNHNLSGMELLEEIHPLPSESGKGANLFQDLNQKLQQEFNMENMMLEEINFGPYLQPTQPFQETTGPKNQGALTSSMHMPPSLASLELLRSYGSRFKMQNTSNLSKGKTCLAHQKMSTVEIVREAGARYVQYSSHWNDNFCIPMHPYGLKYLGNLSEEENGDVELVQFLLAAAERVSCQQFERASRLLLHYQWNSSSYASGNTVQRVVFHFAEALKERIDRETGRITKGAIGLKACKTKIEDTGKRLANFAESLNLTFSYKPVLVTDMAEFKEDHLEVEEDEAVVIYSPYFLRTMISRPDCLENLMRIISNIKPSIMIVLEVEANHNSPSFVNRFIEAMFFYSAFLDCLYTCIEDDECRVITEAILSAGIRNIVAMEGRERTVRNVKIDVWRRFFARYRMVEIGFSESSMYQADLVAREFAIGKFCTVDKNGRSMIVGWKGTPMHSISAWRFL* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0427 461 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 37 235 - -
Lja1g0427 461 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 37 235 IPR005202 -
Lja1g0427 461 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 238 459 IPR005202 -
Lja1g0427 461 Pfam GRAS domain family 173 234 IPR005202 -
Lja1g0427 461 Pfam GRAS domain family 242 459 IPR005202 -
Lja1g0427 461 ProSiteProfiles GRAS family profile. 164 459 IPR005202 -
Lja1g0427 461 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 238 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0427 Lja-Chr1 3757214 3758857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0427 240 460 GRAS Transcription Factor Family AT1G66350 28.378 6.38e-31 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja1g0427 GRAS 5.3e-48 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0427 - - lja:Lj1g3v4850500.1 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0427 1 3757214 3758857 Lja1g0427 1 3757214 3758857 ECH