Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0426 ATGTTCTCCGAAGACATTGCATGTTCCTCCGAGTCCGAACCTCAAGAACAACATGGAGAGGCCACAACAGATTATCTTGGAGTCTTATGGACAAAGTTAAATCTGCTGAAAAAACAAATCCGGAATAAGCGAATTGAATCGATTAAAGAAAAACTTAAGAAGAATGAGGAGATTGTACAGTGTCAGGTTTCAGCAATCATCTCAGATATATCAAGAAGAGGCTCATTACGGACTGGAGAAAATACCATTCAAATGCTTTCTTCAAGAATTGACCGACCTTTTTGTAAGCTCATTAGTTTCCCTCAAGGTTTGGGAAAAAATGCCGAGAACAACAATCGAAACAATCAAGACGTATCACCTGTGATAAGTATCAAGATTCCGTACATTGAAAGATTACCACCATTTACATGTTGGGTTCATTTGGCGAGAAATCAGAGAATGACCGAAGAATTATCAGTTATTAATGGAGGAGTGCAAGTATACTATGATAAAAGTGCAAGTCAGGGATTGATGATTAGTGACAGTGACGAGGAGTTAGAAGTGCCTGAGAATGCTAAACATGAATTTTCGCAGGGAGACGACCAAGTTCTATGGATGGCACTTGAGGAACATGGGTTAACTGAGGAGGTATTGACTCTTGCTAGTTATTTGATCGAGGATACGACCGTTTCAGAAATTCAGGATCGGTATAAACATCTCAAGGAAAAGAACATGAGGGGGCTTAACCAGCATTCTGAAGATTTTGGAGAATGCGAATCTCTTTTTGGCATATGTTTGGATAAGAGCTTGAGTGCTGCTTTAGATACTTTTGATAACCTCTTCTGTCGCCAGTGCTTCGTCTTTGGCTGTCCTCTGCATGGTTGTTCTCAACCTTTAATATATCCTAGTGAAAGGCAACTAGATTTGTTTGAGCCTGAAGTTGACAAGAAACCATGCAGTGATCAGTGTTACCTTCAGGGTATGGATGGGGAAGGTGGGATATCGGAACCCTCCACTATAAAGAAGTCTGGTGATCAAAGTATTAAAGCCATCTTGCAGAAAGAAAGACTCAATTTTGCGACAAGACCTTTTACAGAAAAAGTTGTTTTCCATGAAGATCTCAATTCAGATGGCTCTCAGAGTTCTTTTGCATCTTCAAAAAGTTTTGTTGAACATACTTCAAGTAAATCAATAGTTTCTGGAAGCACTGGTCATGGTGAGCATGAGAAGGGTTTTCCGCATCAGCAAAAGGATATCGCAAAAGAGATAGAATTTGAGCGACTGCCCAACTTAGTAGATGTGCAAATGTTAAGTATCTCAGATTGGAAACCTCTGGAGAAAGAGTTATATTTGAAGGGGGTAGAAATTTTTGCGAGAAAAAGTTGCCTTATATCCCGGAACTTACTTTCTGGCTTGAAGACTTGTATGGAAGTAGGTAGTTACATTTATGCTGGTGAAGGGTCAATGGCCTACAACATGGGCAAAAATGTAGAGTCCACGGACCAAAAGATTCCATCAAGATCACGACGGAAAAGAGGAAAACCTAAGAGGATAAAAACTACTTATAGGACAAGTCATGAAAACAAGCAATATATGCCTTGTGGATGTCAGGGAGTATGTGGAAAAGAATGCCCTTGTCATCAAATTGGAAATTCTTGTGAAAAATATTGTGGGTGTTCAAAGCTCTGCAGAAATCGGTTCGGAGGATGTAATTGTACTAAGAGTCAATGTAAAACTCGACACTGTGCATGCTTTGCAACAAATAGGGAATGTGACCCAGATGTTTGTAAGAATTGCTGGATTAGTTGTGGCGATGGTTCATTAGGGGAGCCACCTCAACGTGGAGATGGTCAATGTGAAAATATGAAGCTACTTTTAGGGAAAAAAGAGAGGATTCTATGGGCAAAGTCTGATATTGCAGGATGGGGGGCTTTCATAAAGAACCCAGTTGACAAAAATGGTTTCCTAGGAGAGTACACCGGTGAATTGATCTCTTGTGAAGAAGCAAATGGGCTCATAAACCCCACTTACCTTTTTACCTTGAATGATCAGTATGTTGTTGATTCTTTTCGCAAAGGAGACAAGTTGAAATTTGCAAACCACTCTTCAAACCCCAACTGTTATGCTAAGATATTATTTGTTGCTGGGGATCATCGAATAGGCATATTTGCGCAGAGACGCATTGAAGCTGGTGAGGAGATTTTTTATGATTATTGCTATGATCAAAGTCTTTCACCGGCATGGGCTCTTAAACCCAATGGCTCCAATAGAGGTGGATCAAAGGGTTCTCGGGGTAGGCCAAAGAAAAACCCTTCTTATTGA 2301 0.4024 MFSEDIACSSESEPQEQHGEATTDYLGVLWTKLNLLKKQIRNKRIESIKEKLKKNEEIVQCQVSAIISDISRRGSLRTGENTIQMLSSRIDRPFCKLISFPQGLGKNAENNNRNNQDVSPVISIKIPYIERLPPFTCWVHLARNQRMTEELSVINGGVQVYYDKSASQGLMISDSDEELEVPENAKHEFSQGDDQVLWMALEEHGLTEEVLTLASYLIEDTTVSEIQDRYKHLKEKNMRGLNQHSEDFGECESLFGICLDKSLSAALDTFDNLFCRQCFVFGCPLHGCSQPLIYPSERQLDLFEPEVDKKPCSDQCYLQGMDGEGGISEPSTIKKSGDQSIKAILQKERLNFATRPFTEKVVFHEDLNSDGSQSSFASSKSFVEHTSSKSIVSGSTGHGEHEKGFPHQQKDIAKEIEFERLPNLVDVQMLSISDWKPLEKELYLKGVEIFARKSCLISRNLLSGLKTCMEVGSYIYAGEGSMAYNMGKNVESTDQKIPSRSRRKRGKPKRIKTTYRTSHENKQYMPCGCQGVCGKECPCHQIGNSCEKYCGCSKLCRNRFGGCNCTKSQCKTRHCACFATNRECDPDVCKNCWISCGDGSLGEPPQRGDGQCENMKLLLGKKERILWAKSDIAGWGAFIKNPVDKNGFLGEYTGELISCEEANGLINPTYLFTLNDQYVVDSFRKGDKLKFANHSSNPNCYAKILFVAGDHRIGIFAQRRIEAGEEIFYDYCYDQSLSPAWALKPNGSNRGGSKGSRGRPKKNPSY* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0426 766 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 17 763 IPR045318 GO:0006338|GO:0018024
Lja1g0426 766 MobiDBLite consensus disorder prediction 1 20 - -
Lja1g0426 766 SMART set_7 623 738 IPR001214 GO:0005515
Lja1g0426 766 MobiDBLite consensus disorder prediction 1 16 - -
Lja1g0426 766 Gene3D SET domain 524 733 IPR046341 -
Lja1g0426 766 ProSiteProfiles CXC domain profile. 503 609 IPR026489 -
Lja1g0426 766 Pfam CXC domain 562 593 IPR041355 -
Lja1g0426 766 ProSiteProfiles SET domain profile. 623 732 IPR001214 GO:0005515
Lja1g0426 766 SUPERFAMILY SET domain 515 734 IPR046341 -
Lja1g0426 766 SMART CXC_2 563 595 IPR033467 -
Lja1g0426 766 MobiDBLite consensus disorder prediction 490 512 - -
Lja1g0426 766 Pfam SET domain 668 731 IPR001214 GO:0005515
Lja1g0426 766 MobiDBLite consensus disorder prediction 744 766 - -
Lja1g0426 766 CDD SET_EZH 623 733 - -
Lja1g0426 766 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 17 763 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0426 Lja-Chr1 3742496 3751929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0426 612 731 C2H2 Transcription Factor Family AT2G23740 27.972 1.62e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja1g0426 SET 2.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0426 - K11430 pvu:PHAVU_007G213900g 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0426 1 3742496 3751929 Lja1g0426 1 3742496 3751929 ECH
Lja1g0426 1 3742496 3751929 Lja5g1233 5 12382233 12391677 PCT