Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0420 ATGACCACCAAAGGCCTCAATTTCGATGCAGACACAGCCATGGCCAGAGAGTTTCTCTCCAACTTCGCAGATGACCATGGCGATGCCAAATACATGAAGATCCTTCAAGACGTCGCAAATCACAAATTCCGAGCAATAAACATCGAGCTCGAGGACTTAATTAACTATAAGGATCTGGATGAAGAGTTTCTGAACCGTGTTATTGAGAATACCAGAAGGTATATTGGGATTTTCGCCGATGCTATCGACGAGCTCATGCCGGCTCCCACTGAGACCTTTACTGATGATGATCATGACATATTGATGACTCAGAGATCTGATGAAGGGACCGAAGGAGCTGATGGTTCCGACCCGCGTCAGAGGATGCCTCCTGAGATCAGGCGATACTATGAAGTTTACATCAGTGCAGCTTCAAAAGGACAGCCATTTACAATTAGGGAGGTGAAGGCTTCCAACATTGGTCAGCTTGTAAGGATATCTGGCATTGTGACTCGTTGCTCAGATGTTAAACCACTGATGCAAGTGGCTGTGTACACGTGTGAGGAATGTGGTTTCGAAATTTACCAGGAAGTCACAGCTCGAGTCTTCATGCCTTTGTTTGAGTGTCCATCAGGGCGCTGTAAGACAAATGCAAATAAGGGGAATGTCATCCTTCAACTGAGAGCATCAAAGTTTTTGAGGTTTCAAGAGGCAAAAGTTCAAGAGTTAGCTGAACATGTTCCGAAAGGCCATATTCCAAGAACGATGACTGTTCACTTTAGGGGAGAACTCACAAGAAAGGTAGCTCCAGGTGATGTGGTTGAATTATCTGGGATTTTTCTTCCTATGCCTTACACTGGTTTTAGAGCAATGCGGGCTGGCCTAGTTGCTGACACGTACTTAGAGGCCATGTCTGTAACTCATTTCAAGAAAAAATATGAAGAATATGAACTTCAAGGAGATGAGGAAAAGCAGATAGCAAGTTTATCAGAAGATGGTGACATCTACAATAAGTTGGCACGGTCACTAGCCCCTGAAATTTTTGGACATGAAGATATTAAAAAAGCACTGCTTCTTCTTCTTGTTGGTGCTCCCCATCGGAACTTGAAAGATGGGATGAAGATCAGAGGAGATTTACATATATGTTTGATGGGTGATCCTGGTGTTGCCAAGAGTCAGCTTCTTAAACATATAATCAATGTAGCACCCAGGGGTGTGTACACTACTGGCAGAGGAAGTAGTGGGGTTGGTCTGACTGCTGCTGTTCAGAAAGATCCTGTGACAAATGAGTTTGTCTTGGAAGGCGGGGCATTGGTGCTAGCAGATATGGGCATCTGCGCTATTGATGAATTTGACAAGATGGATGAATCGGATCGTACTGCTATCCATGAAGTTATGGAACAACAGACTGTTAGCATTGCCAAGGCTGGAATCACTACATCGCTGAATGCAAGGACTGCTGTGCTTGCTGCAGCTAATCCAGCATGGGGAAGATATGATCTAAGACGAACTCCAGCTGAAAATATTAATCTTCCTCCTGCCCTCCTATCAAGATTTGATCTGCTGTGGTTAATCCTTGATCGGGCAGATATGGATACTGATCTTGAAATGGCCAGGCATGTTGTCTATGTCCACCAAAATAAAGAGTCTCCCGCTCTGGGATTCACTCCTCTTGAGCCATCTGTTCTCCGTGCATACATATCAGCTGCAAGAAGGTTGTCTCCTAGTGTCCCAAGGGAACTGGAAGAGTATATTGCTAGTGCATATTCAAGCATTCGTCAAGAAGAAGCAAGGTCTAATGCTCCCCACTCTTATACAACTGTCAGAACATTGCTCAGTATTCTCCGCATATCAACTGCACTAGCAAGACTCCGTTTTTCTGACACTGTTGCTCAGAGTGATGTGGACGAGGCACTGAGGTTAATGCAGATGTCAAAATTCTCTTTGTACTCAGATGAGCGTCAAAAATCTGGTCTGGATGCCATATCTGATATATATTCCGTACTGCGAGATGAAGCTGCCAGAAGCAAGCAAATGGATATCAGCTATGCCCGTGCATTGAATTGGATATCTAGGAAGGGATACAGCGAGGCTCAGTTGAAAGAATGTTTGGAAGAGTATGCAGCATTAAATGTATGGCAGATACATCCTCACACCTTCGACATACGATTTATTGATGCTTGA 2163 0.4429 MTTKGLNFDADTAMAREFLSNFADDHGDAKYMKILQDVANHKFRAINIELEDLINYKDLDEEFLNRVIENTRRYIGIFADAIDELMPAPTETFTDDDHDILMTQRSDEGTEGADGSDPRQRMPPEIRRYYEVYISAASKGQPFTIREVKASNIGQLVRISGIVTRCSDVKPLMQVAVYTCEECGFEIYQEVTARVFMPLFECPSGRCKTNANKGNVILQLRASKFLRFQEAKVQELAEHVPKGHIPRTMTVHFRGELTRKVAPGDVVELSGIFLPMPYTGFRAMRAGLVADTYLEAMSVTHFKKKYEEYELQGDEEKQIASLSEDGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRNLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQKDPVTNEFVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDTDLEMARHVVYVHQNKESPALGFTPLEPSVLRAYISAARRLSPSVPRELEEYIASAYSSIRQEEARSNAPHSYTTVRTLLSILRISTALARLRFSDTVAQSDVDEALRLMQMSKFSLYSDERQKSGLDAISDIYSVLRDEAARSKQMDISYARALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0420 720 Pfam MCM P-loop domain 316 538 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja1g0420 720 Gene3D - 313 645 IPR027417 -
Lja1g0420 720 Gene3D - 145 273 IPR012340 -
Lja1g0420 720 Pfam MCM N-terminal domain 16 134 IPR027925 -
Lja1g0420 720 ProSiteProfiles MCM family domain profile. 328 534 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja1g0420 720 Pfam MCM AAA-lid domain 555 638 IPR041562 -
Lja1g0420 720 PRINTS Mini-chromosome maintenance (MCM) protein family signature 508 516 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja1g0420 720 PRINTS Mini-chromosome maintenance (MCM) protein family signature 429 443 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja1g0420 720 PRINTS Mini-chromosome maintenance (MCM) protein family signature 481 493 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja1g0420 720 PRINTS Mini-chromosome maintenance (MCM) protein family signature 457 470 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja1g0420 720 PRINTS Mini-chromosome maintenance (MCM) protein family signature 369 384 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja1g0420 720 SUPERFAMILY Nucleic acid-binding proteins 15 296 IPR012340 -
Lja1g0420 720 CDD MCM7 331 638 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lja1g0420 720 Gene3D - 12 103 - -
Lja1g0420 720 Gene3D - 172 226 - -
Lja1g0420 720 PANTHER DNA REPLICATION LICENSING FACTOR MCM7 39 698 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lja1g0420 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 650 IPR027417 -
Lja1g0420 720 ProSitePatterns MCM family signature. 437 445 IPR018525 GO:0003677|GO:0005524|GO:0006260
Lja1g0420 720 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 39 698 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lja1g0420 720 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 287 297 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lja1g0420 720 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 160 171 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lja1g0420 720 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 122 134 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lja1g0420 720 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 195 207 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lja1g0420 720 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 178 189 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lja1g0420 720 Pfam MCM OB domain 145 276 IPR033762 -
Lja1g0420 720 SMART mcm 141 640 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0420 Lja-Chr1 3703385 3708748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0420 4 718 Core DNA Replication Machinery Family AT4G02060 82.937 0.0 1254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0420 K02210 - gmx:100802903 1311.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0420 1 3703385 3708748 Lja1g0420 1 3703385 3708748 ECH