Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0418 ATGGCAGAGGTTGTCTTGTTGGTTGATGATTTGAAGTTTCTTTCTGGGATTTCTTGGTGTCGAATATGCCATGAAGAAGAATTTGAGAGCTCCAAAAGCTTGGAAGCACCCTGTTCTTGTTCTGGAACCGTTAAGTTTGCTCATAGAGATTGCATACAGAGATGGTGCAACGAGAAAGGAAACACAACATGTGAAATATGTCTCCAGCAATACAAACCTGGATATACAGCTCCTCCTCCAAAGAAGTCTTTGATAAATGATGAATCAATTTCCATTAGTGGGGAGGAAGAAGCAAGAACAGAGGATATGGTGGAAGGAGTTGCAATAGAAAGTGATTACTCAGAATGCAGCTCTGCCTCTGAAAGAAACGTGTCTTGCTGTCGATCACTAGCATTAGCTTTTTCAGCTGTCTTACTTATAAGACATCTTTTTGGAGTGTTTACAAATGGAACAGAAGATTACCCATTTACACTTCCCACAGTCATTGTATTGAAGGCTAGCGGAATTATTATACCCATGTACATAGTTATTAGGACGATCGGAGCTATTCAGAACAAAATTCAGCGACGGTGCCAGGATTCTGACTACGACGTAGCTATGTCTTATGAAGATGATGAAAATGAAGGATCACATGATGTAAATTTAATACATTCATAG 657 0.3957 MAEVVLLVDDLKFLSGISWCRICHEEEFESSKSLEAPCSCSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYKPGYTAPPPKKSLINDESISISGEEEARTEDMVEGVAIESDYSECSSASERNVSCCRSLALAFSAVLLIRHLFGVFTNGTEDYPFTLPTVIVLKASGIIIPMYIVIRTIGAIQNKIQRRCQDSDYDVAMSYEDDENEGSHDVNLIHS* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0418 218 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Lja1g0418 218 SMART ringv_2 19 68 IPR011016 GO:0008270
Lja1g0418 218 CDD RING_CH-C4HC3_MARCH 20 67 - -
Lja1g0418 218 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 207 IPR033275 -
Lja1g0418 218 Pfam Protein of unknown function (DUF3675) 73 180 IPR022143 -
Lja1g0418 218 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 207 - -
Lja1g0418 218 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Lja1g0418 218 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Lja1g0418 218 SUPERFAMILY RING/U-box 18 72 - -
Lja1g0418 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 77 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0418 Lja-Chr1 3680347 3682761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0418 20 67 C3H Transcription Factor Family AT2G37950 44.898 4.47e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0418 - - gmx:100802379 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0418 1 3680347 3682761 Lja1g0418 1 3680347 3682761 ECH
Lja1g0418 1 3680347 3682761 Lja5g1225 5 12263093 12265339 PCT