Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0412 ATGGCGCATCGAAGAGCCAAGCTGTTGTTCTTTCTATGCGCTTTCTGCTATTGTCTCAACGCCATTGCTGGAAAGAGCTATTATGATATACTTCAACTGTCGAAAGGTGCATCCGATGATCAAATCAAGAGGGCGTATAGGAAACTTGCATTGAAGTATCATCCTGATAAGAATCCCGGCAATGAAGAAGCTAATAAGAGATTTGCTGAGATTAGCAATGCTTATGAAGTATTGTCGGATAGCGAGAAGAGAAATATCTATGACAGGTATGGTGAAGAGGGTTTGAAGCAGCATGCTGCTAGTGGAGGCAGAGGTGGCGGAATGAACATGCAAGACATTTTTAGCTCTTTCTTTGGTGGGGGATCAATGGAGGATGAGGAGGAGAAAATCGTAAAAGGTGATGATGTGATTGTTGAATTGGATGCAAGCCTTGAAGATTTGTACATGGGTGGTTCCTTAAAGGTTTGGAGGGAGAAAAATGTTTTAAAGCCAGCACCTGGGAAGAGACGCTGTAACTGTAGAAATGAGGTTTATCACAGGCAAATTGGACCAGGGATGTTTCAGCAGATGACAGAGCAGGTCTGTGAGCAATGTCCTAATGTCAAATATGTAAGGGAGGGCTATTTCGTCACTGTTGATATTGAGAAAGGCATGCAAGATGGACAGGAAGTTCTATTTTATGAGGATGGTGAGCCCATAATTGATGGAGAATCTGGAGATTTAAGGTTTCGAATCCGTACTGCACCTCATGAAGTCTTCAGGAGGGAAGGCAATGACTTGCATACAACTGTCACTATAACTCTGGTTCAAGCCCTTGTTGGTTTTGAGAAGACCATTAAACACTTAGATGAGCATCTGGTGGACATAGGCTCAAAGGGCATCACAAATCCAAAGCAAGTAAGGAAGTTCAAAGGGGAAGGCATGCCATTGCATATGAGCACGAAGAAAGGAGATCTTTACGTCACTTTTGAGGTTCTATTCCCCACCTCACTAAAGGAGGAACAGAAAACAAAGATTAAAGAAATTCTTGATTAG 1035 0.4251 MAHRRAKLLFFLCAFCYCLNAIAGKSYYDILQLSKGASDDQIKRAYRKLALKYHPDKNPGNEEANKRFAEISNAYEVLSDSEKRNIYDRYGEEGLKQHAASGGRGGGMNMQDIFSSFFGGGSMEDEEEKIVKGDDVIVELDASLEDLYMGGSLKVWREKNVLKPAPGKRRCNCRNEVYHRQIGPGMFQQMTEQVCEQCPNVKYVREGYFVTVDIEKGMQDGQEVLFYEDGEPIIDGESGDLRFRIRTAPHEVFRREGNDLHTTVTITLVQALVGFEKTIKHLDEHLVDIGSKGITNPKQVRKFKGEGMPLHMSTKKGDLYVTFEVLFPTSLKEEQKTKIKEILD* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0412 344 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 8 343 IPR044713 GO:0006457|GO:0030544
Lja1g0412 344 Gene3D DnaJ domain 23 127 IPR036869 -
Lja1g0412 344 Pfam DnaJ domain 27 88 IPR001623 -
Lja1g0412 344 SUPERFAMILY HSP40/DnaJ peptide-binding domain 131 256 IPR008971 GO:0006457|GO:0051082
Lja1g0412 344 Gene3D - 128 249 - -
Lja1g0412 344 SUPERFAMILY HSP40/DnaJ peptide-binding domain 252 337 IPR008971 GO:0006457|GO:0051082
Lja1g0412 344 ProSitePatterns Nt-dnaJ domain signature. 68 87 IPR018253 -
Lja1g0412 344 PRINTS DnaJ domain signature 28 46 IPR001623 -
Lja1g0412 344 PRINTS DnaJ domain signature 46 61 IPR001623 -
Lja1g0412 344 PRINTS DnaJ domain signature 63 83 IPR001623 -
Lja1g0412 344 PRINTS DnaJ domain signature 83 102 IPR001623 -
Lja1g0412 344 PANTHER BNAA09G39960D PROTEIN 8 343 - -
Lja1g0412 344 CDD DnaJ 27 80 IPR001623 -
Lja1g0412 344 SUPERFAMILY Chaperone J-domain 22 122 IPR036869 -
Lja1g0412 344 ProSiteProfiles dnaJ domain profile. 26 91 IPR001623 -
Lja1g0412 344 SMART dnaj_3 25 83 IPR001623 -
Lja1g0412 344 Pfam DnaJ C terminal domain 138 328 IPR002939 -
Lja1g0412 344 CDD DnaJ_C 134 331 - -
Lja1g0412 344 Gene3D - 250 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0412 Lja-Chr1 3613024 3617821 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0412 27 117 C2H2 Transcription Factor Family AT1G74250 39.175 7.53e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0412 K09517 - gmx:100799701 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0412 1 3613024 3617821 Lja1g0412 1 3613024 3617821 ECH