Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0411 ATGGGAAGAGCTCCTTGTTGTGAGAAAGTGGGACTCAAGAGGGGGAGGTGGACTGCTGAGGAGGATGAACTCTTGACCAAGTACATTCAAGCCAGTGGTGAAGGTTCTTGGAGGTCATTGCCTAAAAATGCAGGATTGCTAAGATGTGGGAAGAGTTGCAGATTGAGATGGATTAACTATTTGAGAGGTGATCTTAAAAGAGGGAACATTTCTGATGAAGAGGAGAGTCTCATTGTGAAGTTGCATGCTTCTTTTGGCAACAGGTGGTCACTGATTGCAAGCCACATGCCAGGCAGAACGGACAACGAGATAAAGAACTACTGGAACTCTCACTTGAGCAGGAAATTAGTTTACACCTTCCGAGGAAGCACCACTAAATCCATCGTCGACACACCTCCCAAACGGAGGAGATGTGGCAGAACCAGCCGCTGGGCCATGAAGAAGAACAAGACCTATTCCCTCATCAATAATGATCTCCAAAACCAAAACAATGAACTAGAGAAAGAAGACCCTGTAGCACGGTGTGATGTGAAAGGAAGTGACGACATTTTGTGTCAGGAGGCTATTAATGTTGACGATGATGTGTTGAGTTTTCATGAGTTCATGGACACGTGCTTGATGGAACCAAGTGGGGATCATGATGTTGATGAAGAGAGAGAAAGCGCAGTGATGAATGATGGCGGAAGTGAAGGAGTGCGTGACACGTGCAGTACTGTCGACACCGTGGTAACCAGTAGGGACTCACAGTCAAAGAGTGAAAATCATAAGTTACATAATTCTTGTTCTTCTAATTCCTTAGGCTATTCATCGGGCTTGGATTCTGTCATGGAAATGAATCGTGAAGACGAGTCATCAGTGCTGTCCAGGGAGCAGAATGAAAACCTGCTGACTTGGTTGTGGGAAGATGAAGACTGGGAAAAGGATTTTCAGATTGTTGATCCTGAGAAACATAATGACATGCTTTATTGGTTTCTCTCTTGA 981 0.4485 MGRAPCCEKVGLKRGRWTAEEDELLTKYIQASGEGSWRSLPKNAGLLRCGKSCRLRWINYLRGDLKRGNISDEEESLIVKLHASFGNRWSLIASHMPGRTDNEIKNYWNSHLSRKLVYTFRGSTTKSIVDTPPKRRRCGRTSRWAMKKNKTYSLINNDLQNQNNELEKEDPVARCDVKGSDDILCQEAINVDDDVLSFHEFMDTCLMEPSGDHDVDEERESAVMNDGGSEGVRDTCSTVDTVVTSRDSQSKSENHKLHNSCSSNSLGYSSGLDSVMEMNREDESSVLSREQNENLLTWLWEDEDWEKDFQIVDPEKHNDMLYWFLS* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0411 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja1g0411 326 PANTHER MYB TRANSCRIPTION FACTOR 2 306 - -
Lja1g0411 326 CDD SANT 16 61 IPR001005 -
Lja1g0411 326 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja1g0411 326 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja1g0411 326 Gene3D - 11 67 - -
Lja1g0411 326 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja1g0411 326 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja1g0411 326 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 306 - -
Lja1g0411 326 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja1g0411 326 CDD SANT 71 112 IPR001005 -
Lja1g0411 326 Gene3D - 71 116 - -
Lja1g0411 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja1g0411 326 Coils Coil 149 169 - -
Lja1g0411 326 SMART sant 13 63 IPR001005 -
Lja1g0411 326 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0411 Lja-Chr1 3599617 3602769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0411 1 147 MYB Transcription Factor Family AT2G47460 71.069 2.56e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g0411 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0411 K09422 - gmx:100817316 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0411 1 3599617 3602769 Lja1g0411 1 3599617 3602769 ECH
Lja1g0411 1 3599617 3602769 Lja5g1214 5 12141186 12144277 PCT