Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0405 ATGGCGACGAGAAATCGAACTCTGCAATTCCGGAGGCACAGAGACGCCGTCAAGAGCGTTCGCGCTCCTCTGTCTTCATCAGCATCTTCTTCCGGCGGTCCTGTCATTGAAATGGTCTCCACTTCGCTTCTCCGTTCCAATAACCGATCTTCTTACGAACCTCTAAGCACCCACGATCCAGGTCCAGGAACCTCAAGAGATGCTTTTACTGTGGGCTTGCCACCATCTTGGGTTGATGATTCTGAAGTAATAGCTACAAGTATACAACAAGCTAAGGTTAAAATGGCTGAATTAACCAAAGCTCATGCAAAGGCTTTGATGCCTTCCTTTGGTGATGGCAAAGATGATCAGCACCTGATTGAGACTCTCACTCAAGAAATTACAGCCCTCCTCAGAAAGTCTGAGGTGAGGCTAAAAAGACTTTCCACTGCTGGTGGATCTTCTGAGGATTCTAATGTCAGGAAAAATGTGCAGCGTTCACTTGCTACAGACCTCCAGAACCTGTCGATGGATCTCCGGCGAAAGCAGTCTGCATATTTGAAACGTCTGCAGCAGCAAAAAGAGGGTTATGATGGAATTGACTTGGAGATGAACTTCAATGGGAGTAAATCTGGTATGCAGGATGATGGATTCAGTGATGTGGGTTTTAGTGAAGCGCAAATGACAAAGCTTAAAAAAAGTGAGCATATATCAGAGGAAAGGGAGAGAGAGATTGAGCAGGTTGTTAAATCCGTCAATGAACTTGCTCAGATCATGAAGGATCTCTCCGTCCTAGTGATAGATCAGGGAACAATTGTGGATAGAATTGACTATAATATTCAGAGTGTTGCTACATCAGTTGAGGAGGGCTTAAAGCAGTTGCGAAAGGCAGAAAGAACGCAGAAATCAGGAGGGATGGTTACATGTGCAACAGTGCTTGTTATAATGTGCTTTGTCATGCTAGCTCTCTTGATACTCAAGGAGATAATCTTCTAG 975 0.4472 MATRNRTLQFRRHRDAVKSVRAPLSSSASSSGGPVIEMVSTSLLRSNNRSSYEPLSTHDPGPGTSRDAFTVGLPPSWVDDSEVIATSIQQAKVKMAELTKAHAKALMPSFGDGKDDQHLIETLTQEITALLRKSEVRLKRLSTAGGSSEDSNVRKNVQRSLATDLQNLSMDLRRKQSAYLKRLQQQKEGYDGIDLEMNFNGSKSGMQDDGFSDVGFSEAQMTKLKKSEHISEEREREIEQVVKSVNELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATSVEEGLKQLRKAERTQKSGGMVTCATVLVIMCFVMLALLILKEIIF* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0405 324 MobiDBLite consensus disorder prediction 14 35 - -
Lja1g0405 324 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 228 290 IPR000727 -
Lja1g0405 324 Pfam SNARE domain 264 314 IPR000727 -
Lja1g0405 324 PANTHER SYNTAXIN OF PLANTS PROTEIN 1 319 - -
Lja1g0405 324 MobiDBLite consensus disorder prediction 47 66 - -
Lja1g0405 324 ProSitePatterns Syntaxin / epimorphin family signature. 234 273 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lja1g0405 324 SUPERFAMILY t-snare proteins 73 283 IPR010989 GO:0016020|GO:0016192
Lja1g0405 324 Gene3D - 74 282 - -
Lja1g0405 324 CDD SNARE_syntaxin16 240 289 - -
Lja1g0405 324 PANTHER SYNTAXIN 1 319 IPR045242 -
Lja1g0405 324 SMART tSNARE_6 223 290 IPR000727 -
Lja1g0405 324 SMART SynN_4 68 184 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0405 Lja-Chr1 3569791 3573055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0405 1 324 SNARE and Associated Proteins AT5G26980 69.301 4.86e-157 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0405 K08489 - gmx:100803629 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0405 1 3569791 3573055 Lja1g0405 1 3569791 3573055 ECH