Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0402 ATGTCTTCTTCCGATGCCCATGCCGCCGCCCCTAATATCAACCCCAAAGGTGTTCTCTGCAATGCCGCCGCCGGTGCCTCCGCCGGAGTTATTGCAGCTACATTTGTGTGTCCTTTAGATGTCATCAAAACTAGGCTTCAGGTTGGTTTACCACAGCTCGCTAATAATGGAAGTACTAAAGCGGGCAGGGTAATAGTTGGAAGCTTGGAACAAATATTTCAGAAGGAGGGGTTACGTGGCATGTACCGTGGGCTGGCTCCTACTGTCTTGGCTTTGCTCCCAAATTGGGCAGTTTATTTTACTATATATGAGCAGCTCAAAAGCCATCTTAATTCTAATGATGAAAGCCATCATCTTTCAGTTGGAGCTAATATGGTAGCTGCTTCTGGTGCTGGAGCTGCAACTACCATGTTTACAAATCCACTTTGGGTTGTCAAGACTAGACTTCAGACCCAGGGAATAAGACCCGGTGTTGTGCCATACAGGAGCACAATATCTGCTTTGAGGAGAATTGCACACGAGGAGGGCATACGGGGGCTGTACAGTGGTCTTGTACCTGCTCTGGCTGGTATCAGTCATGTTGCCATCCAATTTCCAACATATGAAAGAATAAAATATTATTTGGCAAATCAAGACGACGCAGCAATGAATAAACTTGGTGCACGTGATGTTGCAATTGCCTCATCAATCTCCAAAATTTTTGCATCCACGTTGACATATCCTCATGAGGTTGTACGCTCCAGACTGCAAGAACAAGGGCACCACTCAGAGAAACGGTACTCCGGTGTGATTGACTGTGTTAGAAAGGTTTTTCAACAAGAGGGTTTACCTGGTTTTTACCGAGGGTGTGCCACCAACCTTCTGAGGACAACACCAGCTGCTGTAATCACATTCACCAGCTTTGAAATGATACACCGTTTTCTTGTTTCAACTTTTCCTTCTGATCCGCAGTTTTTGTGA 960 0.4573 MSSSDAHAAAPNINPKGVLCNAAAGASAGVIAATFVCPLDVIKTRLQVGLPQLANNGSTKAGRVIVGSLEQIFQKEGLRGMYRGLAPTVLALLPNWAVYFTIYEQLKSHLNSNDESHHLSVGANMVAASGAGAATTMFTNPLWVVKTRLQTQGIRPGVVPYRSTISALRRIAHEEGIRGLYSGLVPALAGISHVAIQFPTYERIKYYLANQDDAAMNKLGARDVAIASSISKIFASTLTYPHEVVRSRLQEQGHHSEKRYSGVIDCVRKVFQQEGLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSTFPSDPQFL* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0402 319 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 7 317 IPR044712 GO:0006862|GO:0055085
Lja1g0402 319 SUPERFAMILY Mitochondrial carrier 17 303 IPR023395 -
Lja1g0402 319 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 307 IPR018108 -
Lja1g0402 319 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 7 317 - -
Lja1g0402 319 Gene3D Mitochondrial carrier domain 14 311 IPR023395 -
Lja1g0402 319 PRINTS Mitochondrial carrier protein signature 134 152 IPR002067 GO:0055085
Lja1g0402 319 PRINTS Mitochondrial carrier protein signature 228 250 IPR002067 GO:0055085
Lja1g0402 319 PRINTS Mitochondrial carrier protein signature 21 34 IPR002067 GO:0055085
Lja1g0402 319 PRINTS Mitochondrial carrier protein signature 84 104 IPR002067 GO:0055085
Lja1g0402 319 PRINTS Mitochondrial carrier protein signature 34 48 IPR002067 GO:0055085
Lja1g0402 319 ProSiteProfiles Solute carrier (Solcar) repeat profile. 119 207 IPR018108 -
Lja1g0402 319 Pfam Mitochondrial carrier protein 16 113 IPR018108 -
Lja1g0402 319 Pfam Mitochondrial carrier protein 118 210 IPR018108 -
Lja1g0402 319 Pfam Mitochondrial carrier protein 225 309 IPR018108 -
Lja1g0402 319 ProSiteProfiles Solute carrier (Solcar) repeat profile. 16 109 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0402 Lja-Chr1 3552626 3556721 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0402 14 315 Chloroplast and Mitochondria Gene Families AT2G47490 77.558 3.35e-160 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0402 K15115 - gmx:100500213 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0402 1 3552626 3556721 Lja1g0402 1 3552626 3556721 ECH