Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0401 ATGGCAGCAGAGGCGGCAACATTGTCGTTTTCAGTGGCTTCAGTCATGGAGGATGTCCTTCAACAACATGGTCATCGCCTCAAGGATCTTGATTTGGAATCTAGGAAAGCTCAAGAAGCTGCATCCAGAAGATATGAGGCAGCAGGGTGGTTGAGAAGAATGGTTGGCGTTGTCGGAGCTAAAGACTTACCAGCTGAGCCCTCTGAGGAGGAGTTTAGGCTTGGTTTGAGAAGTGGGATTATCCTATGTAATGTTATTAATAAGGTTCAATCCGGGGCTGTACCTAAGGTTGTGGAGAGTCCTGTTGATTCTGCAATGATCCTTGATGGGGCACCATTATCCGCATATCAGTATTTTGAAAACGTGAGGAATTTCCTCGTGGCTGTCCAAGAAATTGGACTTCCTACCTTTGAGGCATCTGATCTTGAACAAGGAGGAAAATCATCCAGGATTGTGAACTGTGTCTTGGCACTTAAATCCTATAGTGAATGGAAACAGAACGGGGCAAATGGTGTGTGGAAATTTGGTGGAGCTCTCAAGCCCACCATCTCTGCAAAAACTTTAGTGAGAAAAAACTCAGAACCATTTACTAATTCCTTGGCAAGGACTTCATCAATCAATGAGAAATCTCTTGCTACTCTTAACTCTGACATGGAGTCTAATAAAATGTCTGGTTCCCATTCCTTGAGTATGCTTGTTCGTTCAATTTTATTAGATAAGAAGCCAGAAGAAGTTCCAATGCTGGTTGAATCTGTCTTGAATAAGGTTGTAGAGGAATTTGAGCAGCGTATCGCTAGCCAAGGTGAACAGATGAAAACAGCTTCAAGAGATTCTACTTCTGAAAGCAACGGGTCTGTTTCAAAGTTTGTTATGGAAGACAAAAAGGTAGAGAACAAAATTCATACGGTAACAAGAAAAGAGGATTGTATTCGTAAAAATTGTGTGGCTGCTGGGGAATTGCAGAGCCAACTTCTGAAGCAGCAAATGCTCTTTGACCAACAGCAAAGAGATATTCAAGAGCTAAAGCATATTCTGCACACCACTAAAGGGGGTATGCAGCTCATGCAAGTGAAATTTCATGAGGAGTTTTCCAATCTTGGTATGCACATCCATGGCTTAGCTCATGCTGCTTCTGGCTATCACAAAGTTCTTGAAGAAAACCGCAAACTATACAATCAAGTCCAGGATCTTAAGGGAAGTATTCGGGTGTACTGTCGAGTAAGGCCTTTCTTTCCCGGACAAACAAGCCATTTGAGCTCAGTAGAAAATATAGAAGATGGAACTCTTACAGTTAATATCCCTTCAAAGAATGGGAAGGGGCACAGGTCCTTCAATTTCAACAAAGTATTTGGACCATCTGCAACCCAAGCTGAGGTCTTCTTGGATATGCAGCCACTTATTAGATCTGTTCTTGATGGTTATAATGTTTGCATATTTGCATATGGCCAAACAGGATCAGGAAAAACTCACACCATGACTGGACCAAAGGAGATCACAGAGAAAACCCAAGGAGTAAATTACAGGGCTTTAAGCGATTTATTTCATATAGCAGATCAAAGAAAGGACACTTTCCAATATGATGTTTCTGTACAAATGATGGAGATATATAATGAGCAAGTGAGGGATCTGCTGGTCACTGATGGAACAAACAAAAGATATCCTTTTGCCAATTATTTGATTGTCTTTGGGAAAAGTAGTTCTCACAAAGGACTCAGTGTGCCAAATGCTAGCCTTGTCCCTGTGTCATCGACTGTTGATGTTATTGAACTAATGAACCTTGGGCAACGGAACCGTGCAGTTGGAGCAACAGCTCTTAACGACCGCAGTAGCCGATCTCATAGTTGCTTGACTGTTCATATTCAAGGAAGAGATTTGACATCTGGAGCTATCCTTCGTGGATGCATGCATTTGGTTGACTTAGCAGGAAGTGAGAGGGTAGATAAATCTGAAGCCACAGGAGACAGACTAAAAGAGGCACAGCATATTAACAAGTCACTTTCAGCTTTGGGGGATGTCATTGCTTCCCTTGCTCAGAAAAACTCACATGTTCCTTATAGAAATAGTAAACTCACACAGTTGCTCCAAGATTCACTTGGAGGAAAGGCCAAGACACTAATGTTTGTTCACATAAGTCCAGAGAGTGATGCTATTGGAGAAACACTAAGTACCTTAAAATTTGCAGAAAGAGTTGCTACAGTTGAACTCGGTGCTGCCCGAGTAAACAAAGATAGTACTGCAGATGTTAAAGAGCTCAAAGAACAGATTGCAAGCCTTAAGGCAGCATTGGCAAGAAAGGAAGAAGGGGAATCAGAATATTCTTTATCCGGAAGCTCAGACAAGTATAGGACAAAGGCTAGCGAGCTATCACCTTATGATGTAAACCAGCGAACTGCAGATACTGGGGATCAGCCTGGATGCCGGCGACCAATGGTTGAAGTTGGCAACATCGAGCTTCAGAGTAATACCAAGTTGAGGCACAAAACTCAGGGCTTTGATTTTGATGAGATATCAGCAAATTCACCGCCCTGGCCCCCAGTGAATGTTCAGAGCTATGGGGAGGATGACAGAGAAACAGGTTATGGAGATTGGGTGGATAAGGTCATGGTAAACAAGCAAGACATGAACAAAACTGAGAACCTCTTGGGATGTTGGCAATCAACCAATGGGAACTTGTCACAGGCATTTTATCAGCAATATCTCCAAGATTCTTCCAATGACATGGATGAACTTGATGCTGCAACCAGTGATTCCTCGGAACCTGACTTGCTTTGGCAATTTAATCACTCCAAACTTAACAGTGTGACTAATGGGATGGGATCAAAGATAATATCTGTCTCAAAGGCACCAAAAACCCCAGAACTGAACAAGAATGTTGTTCATTCTTCTCTTGGTGCTTCTGCTTCACCTTCGCTGAGACGATCAAATAGTGCCTCACATCGAACAGGAAGGCATCCAGCTTCAGTTGACGCGAAACGGAAAACTGGGAGTCGAAAGTAA 2997 0.4264 MAAEAATLSFSVASVMEDVLQQHGHRLKDLDLESRKAQEAASRRYEAAGWLRRMVGVVGAKDLPAEPSEEEFRLGLRSGIILCNVINKVQSGAVPKVVESPVDSAMILDGAPLSAYQYFENVRNFLVAVQEIGLPTFEASDLEQGGKSSRIVNCVLALKSYSEWKQNGANGVWKFGGALKPTISAKTLVRKNSEPFTNSLARTSSINEKSLATLNSDMESNKMSGSHSLSMLVRSILLDKKPEEVPMLVESVLNKVVEEFEQRIASQGEQMKTASRDSTSESNGSVSKFVMEDKKVENKIHTVTRKEDCIRKNCVAAGELQSQLLKQQMLFDQQQRDIQELKHILHTTKGGMQLMQVKFHEEFSNLGMHIHGLAHAASGYHKVLEENRKLYNQVQDLKGSIRVYCRVRPFFPGQTSHLSSVENIEDGTLTVNIPSKNGKGHRSFNFNKVFGPSATQAEVFLDMQPLIRSVLDGYNVCIFAYGQTGSGKTHTMTGPKEITEKTQGVNYRALSDLFHIADQRKDTFQYDVSVQMMEIYNEQVRDLLVTDGTNKRYPFANYLIVFGKSSSHKGLSVPNASLVPVSSTVDVIELMNLGQRNRAVGATALNDRSSRSHSCLTVHIQGRDLTSGAILRGCMHLVDLAGSERVDKSEATGDRLKEAQHINKSLSALGDVIASLAQKNSHVPYRNSKLTQLLQDSLGGKAKTLMFVHISPESDAIGETLSTLKFAERVATVELGAARVNKDSTADVKELKEQIASLKAALARKEEGESEYSLSGSSDKYRTKASELSPYDVNQRTADTGDQPGCRRPMVEVGNIELQSNTKLRHKTQGFDFDEISANSPPWPPVNVQSYGEDDRETGYGDWVDKVMVNKQDMNKTENLLGCWQSTNGNLSQAFYQQYLQDSSNDMDELDAATSDSSEPDLLWQFNHSKLNSVTNGMGSKIISVSKAPKTPELNKNVVHSSLGASASPSLRRSNSASHRTGRHPASVDAKRKTGSRK* 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0401 998 MobiDBLite consensus disorder prediction 955 982 - -
Lja1g0401 998 Pfam Kinesin motor domain 406 732 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g0401 998 MobiDBLite consensus disorder prediction 266 287 - -
Lja1g0401 998 PRINTS Kinesin heavy chain signature 473 494 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g0401 998 PRINTS Kinesin heavy chain signature 603 620 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g0401 998 PRINTS Kinesin heavy chain signature 634 652 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g0401 998 PRINTS Kinesin heavy chain signature 683 704 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g0401 998 MobiDBLite consensus disorder prediction 953 998 - -
Lja1g0401 998 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 767 IPR027417 -
Lja1g0401 998 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 5 995 - -
Lja1g0401 998 CDD KISc_C_terminal 398 735 - -
Lja1g0401 998 SMART ch_5 43 161 IPR001715 GO:0005515
Lja1g0401 998 MobiDBLite consensus disorder prediction 265 287 - -
Lja1g0401 998 MobiDBLite consensus disorder prediction 984 998 - -
Lja1g0401 998 Coils Coil 257 277 - -
Lja1g0401 998 ProSiteProfiles Kinesin motor domain profile. 400 733 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g0401 998 ProSiteProfiles Calponin homology (CH) domain profile. 41 163 IPR001715 GO:0005515
Lja1g0401 998 PANTHER KINESIN-LIKE PROTEIN KLP-3 5 995 - -
Lja1g0401 998 SMART kinesin_4 398 741 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g0401 998 Pfam Calponin homology (CH) domain 42 163 IPR001715 GO:0005515
Lja1g0401 998 SUPERFAMILY Calponin-homology domain, CH-domain 41 173 IPR036872 -
Lja1g0401 998 Gene3D Kinesin motor domain 395 775 IPR036961 -
Lja1g0401 998 Gene3D - 28 189 IPR036872 -
Lja1g0401 998 Coils Coil 741 768 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0401 Lja-Chr1 3540942 3546547 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0401 388 782 Calmodulin-binding Proteins AT5G65930 40.000 2.55e-75 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0401 K10406 - gmx:100815713 1595.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0401 1 3540942 3546547 Lja1g0401 1 3540942 3546547 ECH
Lja1g0401 1 3540942 3546547 Lja5g1200 5 12014247 12020963 ECH
Lja1g0401 1 3540942 3546547 Lja5g1200 5 12014247 12020963 PCT