Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0400 ATGGAACAGCTGGTTGAATCTGTCTTGAATAAGGTTGTAGAGGAATTTGAGCAGCGTATCGCTAGCCAAGGTGAACAGATGAAAACAGCTTCAAGAGATTCTGCTTCTGAAAGCTACGGGTCTGTTTCAAAGTTTGTTATGGAAGACAAAAAGGTAGAGAACAAAATTCATACGGTAACAAGGGAAGAGGATTGTATTAGTAAAAATCGTGTGGCTGCTGGGGAATTGCAGAGCCAACTTCTGAAGCAGCAAATGCTCTTTAACCAACAGCAAAGAGATATTCAAGAGCTAAAGCATATTCTGCATACCACTAAAGGGGGTATGCAGCTCATGCAAATGAAATATCATGAGGAGTTTTCCAATCTTGGTAAGTTCATTTATTCTTCTTTTGCAGGTATGCACATCCATGGCTTAGCTCATGCTGCTTCTGGATATCACAAAGTTCTTGAAGAAAACCGCAAACTATACAATCAAGTCCAGGATCTTAAGGGAAGTATTAGGGTGTACTGTCGAGTAAGGCCTTTCTTTCCCGGACAATCAAGCCATTTGAGCTCAGTAGAAAACATAGAAGATGGAACTCTTACAGTTAATGTCCCTTCAAAGAATGGGAAGGGGCACAGGTCCTTCAATTTCAACAAAGTCTTTGGACCATCTGCAACCCAAGGAGGAAAGGCAAAGACACTAATGTTTGTTCACATAAGTCCAGAGAGTGACGCTATTGGAGAAACATTAAGTACCTTAAAATTTGCAGAAAGAGTTGCTACAGTTGAACTCGGTGCTGCCCGAGTAAACAAAGATAGTACTGCAGATGTTAAAGAGCTCAAAGAACAGATTGCAAGCCTTAAGGCAGCATTGGCAAGAAAGGAAGAAGGGGAATCAGAATATTCTTTATCCGGAAGCTCAGACAAATACAGGACAAAGGCTAGCGAGCTATCACCTTATCATGTAAACCAGCGAGCTGCAGATATTGGCGATCAGCCTGGATGCCGGCGACCAATGGTTGAAGTTGGGAACATAGAGCTTCAGAGTAATACCAAGTTGAGGCACAAAACTCAGAGCTTTGATTTTGATGAGATATCAGCAAATTCACCGCCCTGGCCCCCAGTGAATGTTCAGAGCTATGGGGAGGATGACAGAGAAACAGGTTATGGAGAGTGGGTGGATAAGGTCATGGTAAACAAGCAAGACATGAACAAAACTGAGAACCTCTTGGGATGTTGGCAATCAACTTATGGGAACTTATCACAGGCATTTTATCAGCAATATCTCCAAGATTCTTCCAATGACATGGATGAACTTGATGCTGCAACCAGTGATTCCTCGGAACCTGACTTGCTTTGGCAATTTAATCATTCCAAACTTAACAGTGTGACCAATGGGATGGGATCAAAGACTATGAGATCTGTCTCAAAGGCACCAAAAACCCCAGAACTGAGAGATAATGGAGCAATAATGCCTGTTGCTTTGTATGTATCATGA 1479 0.4219 MEQLVESVLNKVVEEFEQRIASQGEQMKTASRDSASESYGSVSKFVMEDKKVENKIHTVTREEDCISKNRVAAGELQSQLLKQQMLFNQQQRDIQELKHILHTTKGGMQLMQMKYHEEFSNLGKFIYSSFAGMHIHGLAHAASGYHKVLEENRKLYNQVQDLKGSIRVYCRVRPFFPGQSSHLSSVENIEDGTLTVNVPSKNGKGHRSFNFNKVFGPSATQGGKAKTLMFVHISPESDAIGETLSTLKFAERVATVELGAARVNKDSTADVKELKEQIASLKAALARKEEGESEYSLSGSSDKYRTKASELSPYHVNQRAADIGDQPGCRRPMVEVGNIELQSNTKLRHKTQSFDFDEISANSPPWPPVNVQSYGEDDRETGYGEWVDKVMVNKQDMNKTENLLGCWQSTYGNLSQAFYQQYLQDSSNDMDELDAATSDSSEPDLLWQFNHSKLNSVTNGMGSKTMRSVSKAPKTPELRDNGAIMPVALYVS* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0400 492 Coils Coil 13 33 - -
Lja1g0400 492 SMART kinesin_4 163 264 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g0400 492 PANTHER KINESIN-LIKE PROTEIN KLP-3 3 221 - -
Lja1g0400 492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 221 IPR027417 -
Lja1g0400 492 Pfam Microtubule binding 151 221 IPR031852 GO:0008017
Lja1g0400 492 ProSiteProfiles Kinesin motor domain profile. 222 256 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g0400 492 MobiDBLite consensus disorder prediction 358 378 - -
Lja1g0400 492 Gene3D Kinesin motor domain 223 298 IPR036961 -
Lja1g0400 492 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 222 481 - -
Lja1g0400 492 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 3 221 - -
Lja1g0400 492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 290 IPR027417 -
Lja1g0400 492 Gene3D Kinesin motor domain 128 222 IPR036961 -
Lja1g0400 492 Coils Coil 264 291 - -
Lja1g0400 492 PANTHER KINESIN-LIKE PROTEIN KLP-3 222 481 - -
Lja1g0400 492 ProSiteProfiles Kinesin motor domain profile. 165 221 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0400 Lja-Chr1 3528024 3531255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0400 153 221 Calmodulin-binding Proteins AT5G65930 35.135 8.53e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0400 K10406 - gmx:100795476 400.593