Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0396 ATGTGTGGCGGTGCTATCATAGCTGACTTCATCCCTCACCACGGCTCTCGCCGCGTCACCGCCTCTGAACTCTGGCCTAACACATTTGCCAAACACAATGACTCCCAGTTCGATTCTTCTCATCATCCTCAGCACCACCAATGTTCTGATTCAGCCCCTCTCAAAAGGTCCCAACCTTCCCCTGCAGCTACAGTGAACGAGCAAGTTGACAAGCCATTGAAGAGGCAGAGGAAAAACCTCTACAGAGGGATTAGGCAGAGACCATGGGGTAAATGGGCTGCAGAGATTCGTGATCCCAGAAAAGGGGTTCGTGTCTGGTTGGGTACTTTCAACACTGCTGAAGAAGCTGCAAGAGCCTATGATAGGGAAGCTAGGAAAATCCGTGGCAAGAAAGCTAAAGTCAACTTCCCCAACGAGGATGATGACCACTTCTCCATTCAATTCCAAGCACCTCCCCTGTTTCAACAGGGTTGCGGTTTGAACAGCAACGAAGTCAATGTCCCCAAAACTCAGACTTTTCAGTTTGCTTATGATCTGAACCAAGAAAGTTGTGCTGGGTTTGGATCTGCTTCGGGGTCGTCAGTGGAAGCAGAAGAAGAAGGGGTTGGAAATGAAGAGAGAAAGACGAACCAGGTGGAGAAGCTTTCTGAGGAGCTTATGGCGTTTGATGACTACATGGGGTTTTATCAGGTTCCGTACTATGAAGAGCAATCCAATGCTAGTGTTCATGAAACTGTGGTAGGGGATCTATGGAACTTCGATGCTGAGGAATGA 774 0.4858 MCGGAIIADFIPHHGSRRVTASELWPNTFAKHNDSQFDSSHHPQHHQCSDSAPLKRSQPSPAATVNEQVDKPLKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDDHFSIQFQAPPLFQQGCGLNSNEVNVPKTQTFQFAYDLNQESCAGFGSASGSSVEAEEEGVGNEERKTNQVEKLSEELMAFDDYMGFYQVPYYEEQSNASVHETVVGDLWNFDAEE* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0396 257 SMART rav1_2 80 143 IPR001471 GO:0003700|GO:0006355
Lja1g0396 257 MobiDBLite consensus disorder prediction 50 65 - -
Lja1g0396 257 MobiDBLite consensus disorder prediction 189 210 - -
Lja1g0396 257 ProSiteProfiles AP2/ERF domain profile. 80 137 IPR001471 GO:0003700|GO:0006355
Lja1g0396 257 MobiDBLite consensus disorder prediction 32 66 - -
Lja1g0396 257 PANTHER EREBP TRANSCRIPTION FACTOR 1 149 - -
Lja1g0396 257 PANTHER DNA-BINDING DOMAIN 1 149 IPR044808 GO:0003700|GO:0009873
Lja1g0396 257 SUPERFAMILY DNA-binding domain 80 138 IPR016177 GO:0003677
Lja1g0396 257 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Lja1g0396 257 PRINTS Ethylene responsive element binding protein signature 103 119 IPR001471 GO:0003700|GO:0006355
Lja1g0396 257 MobiDBLite consensus disorder prediction 35 49 - -
Lja1g0396 257 CDD AP2 81 138 IPR001471 GO:0003700|GO:0006355
Lja1g0396 257 Gene3D AP2/ERF domain 80 138 IPR036955 GO:0003700|GO:0006355
Lja1g0396 257 Pfam AP2 domain 81 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0396 Lja-Chr1 3481682 3482954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0396 1 253 AP2-EREBP Transcription Factor Family AT2G47520 39.921 1.53e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja1g0396 AP2 6.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0396 K09286 - gmx:100819416 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0396 1 3481682 3482954 Lja1g0396 1 3481682 3482954 ECH