Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0391 ATGTACAACCCCATGAGGAAAAAAACAGCACCCTTCCTAACTCTTATACCCATTCTCACCCTTGTTTTCGTGGTCCTCATCTTTTCAGTAACTCACATCCAAAAAGCAACAAAACCACAAGCAACACACCACCTCCATATTCAAAAGCACATCCAACTCCAAGTGGCACACTCCACATGCGAAGGAACACTCTACCCAGAACTATGCGTCTCAACTTTATCCTCCTTCCCAGATCTCACCTCAAAATCCCTCCCACAAATGATTTGCTCTGCCCTCAACCACACCATCGACGAGGTCAAATTGTCCTCCTCCAACTGCAGCAGCATCCAGAACCTCCGAAACCTCGACAAACTCGAGCAGAGAGCCCTCGACGACTGCCTCAATTTATTCGATGACACCACCGCAGAGCTCAAAAGCACCATTGCTGATCTCTCTCAAACCACAGTAGGCTCCAATGGCTACCATCACTGTCAGACACTTCTTAGCGGCGCCATGACAAATGTGTACACTTGTCTCGACGGTTTTGCTTACAGTAAAGGGAGCGTGAGGAGCAAAATACAGAAGGAGTTGTTTGACATTAGCCATCACGTGAGTAACTCACTCGCCATGCTTAAGAAAGTTCCTGGAGTGAAGAGACAACTGTATTCCAGTAAGTCTGAGACTTTCCCTGAATATGGTAAGTTGAAAGATGGGTTTCCATCTTGGGTTTCCCCTAAAGACAGGAAGCTACTACAAGCTGCCGTGAATGAGACCAAGTTTGATCTTGTGGTGGCTAAAGACGGCACCGGAAACTTCGCCACTATAGGGGAAGCTGTGGCTGCTGCTCCTAACTCCAGCGCAACTAGGTTTGTTATACACATAAAAGCTGGGGCTTACTTTGAGAACGTGGAGGTGATAAGGAAGAAGACGAATGTGATGTTTGTGGGAGATGGGATTGGAAAGACTGTTGTGAAGGCCAACAGGAATGTCGTGGATGGCTGGACCACCTTTCAATCAGCTACTGTCGCTGTGGTAGGAGACGGATTCATAGCAAAAGGCATAACCTTTGAGAACTACGCCGGAGCCAGCAAACACCAAGCCGTGGCCCTGAGGAGCGGTTCCGACCTCTCCGCCTTCTACCAATGCAGCTTCGTCGCCTACCAAGACACTCTCTACGTCCACTCCCTCCGCCAATTCTACCGCGAATGCGACATTTACGGCACCGTCGACTTCATCTTCGGCAACGCCGCAGTGGTCTTCCAAAACTGCAACCTCTACGCTCGCAAGCCCGACCCAAAACAGAAGAATCTATTCACCGCACAAGGTAGAGAAGATCCAAACCAGAACACTGGGATTTCCATCTTGAATTGCAAGGTTGCTGCGGCTGCAGATTTGATCCCGGTGAAGGCGTCGTTCAAGAGTTACCTGGGTAGGCCTTGGAAGAAGTATTCGAGAACGGTTTTTCTGAATTCTTACATAGAGGATTTGATTGACCCTGTTGGGTGGTTGGAATGGGATGGAACGTTTGCATTGGATACTCTGTATTATGGGGAGTACAAGAACAGAGGACCTGGTTCCAATACAAGTGCTAGAGTTACATGGCCGGGTTATAAGGTCATCAGTAGTTCTACTGAGGCAAGTCAATTCACAGTTGGGGAGTTCATACAAGGTAATAATTGGTTGAGCTCTACTGGAATTCCATTCTTCTCTGGTTTGAGTTGA 1701 0.4809 MYNPMRKKTAPFLTLIPILTLVFVVLIFSVTHIQKATKPQATHHLHIQKHIQLQVAHSTCEGTLYPELCVSTLSSFPDLTSKSLPQMICSALNHTIDEVKLSSSNCSSIQNLRNLDKLEQRALDDCLNLFDDTTAELKSTIADLSQTTVGSNGYHHCQTLLSGAMTNVYTCLDGFAYSKGSVRSKIQKELFDISHHVSNSLAMLKKVPGVKRQLYSSKSETFPEYGKLKDGFPSWVSPKDRKLLQAAVNETKFDLVVAKDGTGNFATIGEAVAAAPNSSATRFVIHIKAGAYFENVEVIRKKTNVMFVGDGIGKTVVKANRNVVDGWTTFQSATVAVVGDGFIAKGITFENYAGASKHQAVALRSGSDLSAFYQCSFVAYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYARKPDPKQKNLFTAQGREDPNQNTGISILNCKVAAAADLIPVKASFKSYLGRPWKKYSRTVFLNSYIEDLIDPVGWLEWDGTFALDTLYYGEYKNRGPGSNTSARVTWPGYKVISSSTEASQFTVGEFIQGNNWLSSTGIPFFSGLS* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0391 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 209 IPR035513 -
Lja1g0391 566 SMART PMEI_2 51 203 IPR006501 GO:0004857
Lja1g0391 566 SUPERFAMILY Pectin lyase-like 252 564 IPR011050 -
Lja1g0391 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 207 IPR035513 -
Lja1g0391 566 Pfam Plant invertase/pectin methylesterase inhibitor 57 203 IPR006501 GO:0004857
Lja1g0391 566 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Lja1g0391 566 PANTHER PECTINESTERASE 20 562 - -
Lja1g0391 566 PANTHER PECTINESTERASE 20 562 - -
Lja1g0391 566 Pfam Pectinesterase 254 551 IPR000070 GO:0030599|GO:0042545
Lja1g0391 566 CDD PMEI-like_3 58 209 - -
Lja1g0391 566 TIGRFAM PME_inhib: pectinesterase inhibitor domain 20 206 IPR006501 GO:0004857
Lja1g0391 566 Gene3D - 248 565 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0391 Lja-Chr1 3426102 3430392 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0391 80 561 Carbohydrate Esterase AT4G02320 58.233 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0391 K01051 - gmx:100813592 879.782
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0391 1 3426102 3430392 Lja1g0391 1 3426102 3430392 ECH
Lja5g1186 5 11888667 11894480 Lja1g0391 1 3426102 3430392 PCT