Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0390 ATGGCTTCCAAGTCCACGCTATGCAATATTCCCCTCACATTTCTCATTCTCCTACCCTTCTTTGCCTCTATAGCTTTCTCAGACACCCCTCCCACCACCCCTGTTTCTCCAGGAACCGCATGCAAGTCCACCCCAGACCCTTCGTACTGCAAGTCCGTTCTCCCTACCCAAAACGGCAACGTTTATGACTATGGCCGCTTCTCAGTCAAAAAATCACTTTCACAGGCTCGCAAGTTCCTGAACCTAGTCGACAAATATCTCCATCGTGGCTCCACCCTCTCGGCCACCGCGGTTCGGGCACTCCAAGACTGTCGTACGCTCGGCGAGCTCAACTTGGATTTCCTCTCAAGCTCTTTCCAAACCGTGAACAAGACAGCCAGGTTTCTTCCTAGTTTGCAAGCTGATGACATCCAAACACTCCTCAGCGCCATCCTCACCAACCAACAAACATGCTTAGATGGCCTCAAAGACACAGCTTCCGCTTGGAGCGTCAGAAACGGACTCTCCATCCCTCTTTCTAACGACACCAAGCTCTACAGTGTCTCACTCGCACTGTTCACCAAGGGTTGGGTTCCCAGCCGCAAAAACAAAGTCAGTAGCCCGTTGCATCAAACCAGGAAGCAGCTTGGATTCAAAAACGGGCGTTTGCCACTGAAGATGTCAAGCAGAACACGTGCAATCTACGAGTCCGTGAGTCGGAGAAAGCTCCTTCAGACCTCGGTGGGAGATGATGTTGTGGTGAGGGACATCGTAACAGTTAGTCAAGATGGAAGCGGGAACTTCACCACCATCAACGACGCCATTGCCGCTGCTCCGAACAAATCTGTTTCCACCGACGGGTACTTCCTGATTTATGTCACCGCCGGTGTTTATGAAGAGTACGTGTCTATAGATAAGAAGAAGACATACTTGATGATGGTCGGAGATGGTATCAACCAGACAATCATCACCGGCAATCATAGCGTCATTGATGGGTGGACAACCTTCAGCTCCGCCACCTTCGTTGTGGTTGGGCAAGGTTTCGTGGGTGTGAACATAACCATTCGTAACACCGCCGGAGCTGTGAAGCACCAAGCGGTGGCAGTAAGAAATGGAGCGGACTTGTCAGCGTTTTACAGTTGCAGCTTCGAGGGGTACCAAGACACGTTGTACACACATTCCATGAGACAATTCTACAGGGAATGCGACATCTACGGCACGGTGGATTTCATATTTGGAAATGCCAAGGTTGTGTTCCAAAACTGCAACATGTATCCTCGTCTCCCGATGAAGGGGCAATTCAACGCCATAACTGCACAAGGCCGAACAGACCCAAACCAAGACACAGGAACTTCCATCCACAACTGCACCATCAGAGCCGCCGATGATTTGGCCTCCAGCAATGGCGCAACAGCAACATACCTAGGAAGGCCGTGGAAGGAGTATTCAAGAACGGTTTATATGCAAACATCGATGGACAACGTGATCGACAGTGCAGGGTGGCGTGCGTGGGATGGAGAATTTGCATTGAGCACATTGTATTATGCAGAGTTCAACAACAGTGGGCCAGGGTCCAACACAAATGGTAGAGTGACGTGGCAAGGTTACCATGTGATTAACGCCACGGATGCAGCTAACTTCACCGTGTCTAACTTCTTGCTTGGTGATGATTGGTTGCCCCAGACAGGAGTGTCTTACACCAATACCTTGATATAA 1695 0.5032 MASKSTLCNIPLTFLILLPFFASIAFSDTPPTTPVSPGTACKSTPDPSYCKSVLPTQNGNVYDYGRFSVKKSLSQARKFLNLVDKYLHRGSTLSATAVRALQDCRTLGELNLDFLSSSFQTVNKTARFLPSLQADDIQTLLSAILTNQQTCLDGLKDTASAWSVRNGLSIPLSNDTKLYSVSLALFTKGWVPSRKNKVSSPLHQTRKQLGFKNGRLPLKMSSRTRAIYESVSRRKLLQTSVGDDVVVRDIVTVSQDGSGNFTTINDAIAAAPNKSVSTDGYFLIYVTAGVYEEYVSIDKKKTYLMMVGDGINQTIITGNHSVIDGWTTFSSATFVVVGQGFVGVNITIRNTAGAVKHQAVAVRNGADLSAFYSCSFEGYQDTLYTHSMRQFYRECDIYGTVDFIFGNAKVVFQNCNMYPRLPMKGQFNAITAQGRTDPNQDTGTSIHNCTIRAADDLASSNGATATYLGRPWKEYSRTVYMQTSMDNVIDSAGWRAWDGEFALSTLYYAEFNNSGPGSNTNGRVTWQGYHVINATDAANFTVSNFLLGDDWLPQTGVSYTNTLI* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0390 564 Gene3D - 245 563 IPR012334 -
Lja1g0390 564 SUPERFAMILY Pectin lyase-like 248 561 IPR011050 -
Lja1g0390 564 Pfam Plant invertase/pectin methylesterase inhibitor 39 185 IPR006501 GO:0004857
Lja1g0390 564 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Lja1g0390 564 CDD PMEI-like_3 39 190 - -
Lja1g0390 564 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 17 562 - -
Lja1g0390 564 TIGRFAM PME_inhib: pectinesterase inhibitor domain 12 167 IPR006501 GO:0004857
Lja1g0390 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 188 IPR035513 -
Lja1g0390 564 SMART PMEI_2 32 185 IPR006501 GO:0004857
Lja1g0390 564 PANTHER PECTINESTERASE 17 562 - -
Lja1g0390 564 Pfam Pectinesterase 251 549 IPR000070 GO:0030599|GO:0042545
Lja1g0390 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 188 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0390 Lja-Chr1 3414863 3417493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0390 11 564 Carbohydrate Esterase AT1G02810 62.045 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0390 K01051 - gmx:100800971 973.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0390 1 3414863 3417493 Lja1g0390 1 3414863 3417493 ECH