Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0388 ATGGCTATGGATCCTGACATTGAACAAAAGTATGTCCAAAACGGCAAGATCATGGTTGCCACTGCCATCCTTCTCTTCACACTCATACTCATTTTTATCTCCGTCCGCACCTACATCAACCTCTGCCGCCGTCGCCGCCGCCATGACCTCCTCTTCGCGCATCCACTTCCGACCACCGCTTCCTCCAAGGAAGAACGTCTTGACCCTTCCGTTCTCAAGTCTCTCCCCACCTTCACTCACTCCTCCGCAACCCAAGGCCACCTCCAGGACTGCTCCGTCTGCTTGTCGGAGTTCGCCGACGGCGACGAAGGCCGTTTGCTTCCGAACTGCAGCCACTCCTTCCACTCCCCTTGCATCGACGCGTGGTTCGCCTCTCACTCCACCTGTCCCCTCTGCCGAGCCCCGGTCCAACCGGCGCCGGAATCCTCTGCCGCTGAACCGCGCTCTGTTTCGGTTTGGGAACCCGGTGAGGGCTGCTCGTCGGTTCTTCCGGCGCCGATTGCGTCTCCAAGAAAGCCGTTAAGTATAATCGTGGAGCTGCCTGGGGAGGATAGAATTAGAGGGTCGGATTGGACACCCAGGAGAAAGGGGAGGTAG 597 0.5846 MAMDPDIEQKYVQNGKIMVATAILLFTLILIFISVRTYINLCRRRRRHDLLFAHPLPTTASSKEERLDPSVLKSLPTFTHSSATQGHLQDCSVCLSEFADGDEGRLLPNCSHSFHSPCIDAWFASHSTCPLCRAPVQPAPESSAAEPRSVSVWEPGEGCSSVLPAPIASPRKPLSIIVELPGEDRIRGSDWTPRRKGR* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0388 198 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 9 151 - -
Lja1g0388 198 CDD RING-H2_PA-TM-RING 90 133 - -
Lja1g0388 198 PANTHER RING-H2 FINGER PROTEIN ATL64 9 151 - -
Lja1g0388 198 ProSiteProfiles Zinc finger RING-type profile. 91 133 IPR001841 -
Lja1g0388 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 139 IPR013083 -
Lja1g0388 198 SMART ring_2 91 132 IPR001841 -
Lja1g0388 198 Pfam Ring finger domain 90 133 IPR001841 -
Lja1g0388 198 SUPERFAMILY RING/U-box 72 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0388 Lja-Chr1 3407658 3408544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0388 9 145 Rapid Response to Elicitors AT3G16720 40.260 2.83e-30 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0388 - - gmx:100800433 227.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0388 1 3407658 3408544 Lja1g0388 1 3407658 3408544 ECH