Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0386 ATGGGGATCGATTTGAAAGCAGGAGGCAAGTCCAAGAAGACAAAGCGAACCGCCCCAAAATCCAATGATATTTACCTCAAGCTTCTCGTCAAGCTCTACCGTTTTCTGGTTCGGAGGACTGGGAGTAACTTCAACTCTGTTATCCTCAAGCGTCTTTTCATGAGCAAAGTCAACAAGGCACCTCTTTCACTCTCTCGGTTGATTCGTTACACCAAGGGAAAGGAGGGTAAGATTGCTGTAGTTGTTGGGGCTGTCACCGATGATATTCGTGTCTATGAAGTACCTGCACTGAAGGTTGCTGCTCTAAGGTTCACCGAAACTGCCAGAGCTAGAATTGAGAAGGCCGGTGGTGAGTGCCTCACCTTCGATCAGCTCGCTCTTATAGCTCCTCTTGGCCAGAACACGGTTCTTCTTAGAGGTCCTAAGAATGCTCGAGAGGCTGTCAAGCACTTTGGACCAGCTCCTGGCGTGCCACATAGTCACACCAAGCCATATGTCCGTTCTAATGGAAGAAAATTTGAGAAGGCCCGAGGAAAAAGGAATAGCAAAGGCTTTAGAGTTTGA 564 0.4805 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNSVILKRLFMSKVNKAPLSLSRLIRYTKGKEGKIAVVVGAVTDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALIAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSNGRKFEKARGKRNSKGFRV* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0386 187 Gene3D - 1 187 - -
Lja1g0386 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Lja1g0386 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 187 IPR000039 GO:0003735|GO:0005840|GO:0006412
Lja1g0386 187 PANTHER BNAC02G39900D PROTEIN 1 187 - -
Lja1g0386 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0386 Lja-Chr1 3390606 3392467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0386 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 78.495 5.88e-105 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0386 K02883 - gmx:100499789 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0386 1 3390606 3392467 Lja1g0386 1 3390606 3392467 ECH