Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja1g0375 | ATGAGTAGGCGTACGAGCAGAACCGTCTACGTTGGAAATCTACCTGGTGATATCCGTGAAAGAGAAGTTGAAGATTTGTTCTATAAGTATGGAAACATAACTCATATTGACCTAAAGGTTCCGCCAAGGCCTCCTGGCTATGCATTTGTAGAGTTTGAAGACACTCAAGATGCTGAGGATGCAATTCGTGGGCGCGATGGTTATGATTTTGATGGTCACCGTTTACGGGTGGAGCTTGCTCATGGTGGACGTGGTAATTCATCTTCAAGAGATCGATATAGTAGTCATAGCAGTGGTCGTGGTGGACGTGGAGTGTCCAGGCGCTCTGAATATCGTGTTCTAGTCTCTGGGTTGCCCTCTTCTGCATCCTGGCAGGATCTTAAGGATCACATGCGAAAAGCAGGGGATGTATGCTTTTCCCAAGTTTTTCATGATGGCAGGGGTACTACTGGAATTGTGGATTACACCAACCATGATGATATGAAATATGCTGTCAAGAAGCTTGATGACTCTGAGTTCCGAAATGCATTTTCCCGGGGTTATGTTCGTGTGAGGCAATATGATTCGAGGCGGGACTCCAGAAGTCCTAGTGGTGGCCCATCTCATTCTAGAGGAAGAAGCTATAGCCGCAGCCGTAGCCGTAGTCGTAGTTATAGTCGGGGCCGAAGCGAAAGCAAATCTCCAAAGGGTAAATCTTCACCGCGTTCGCCTGCTAAATCTCCAGCAAAATCTGCTTCTCGCTCAAGATCAAGGTCCCGCTCTTTATCAGGATCACGGTCAAGGTCCAAGTCTCCATTGCCATTGCGTAACAAAAGCCCCAAGAGGTGCAGTGCAAGCCCCATAAGACGCAGTGCTAGCCCCAAAAGACGCAGTCCTAGCCCCAAAAGGCGCAGTGCTAGCAGGAGTCCAAGTAGGAGCAGGAGCAGGAGCAAGAGTTTGTCCAGGTGA | 948 | 0.4884 | MSRRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRDGYDFDGHRLRVELAHGGRGNSSSRDRYSSHSSGRGGRGVSRRSEYRVLVSGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKKLDDSEFRNAFSRGYVRVRQYDSRRDSRSPSGGPSHSRGRSYSRSRSRSRSYSRGRSESKSPKGKSSPRSPAKSPAKSASRSRSRSRSLSGSRSRSKSPLPLRNKSPKRCSASPIRRSASPKRRSPSPKRRSASRSPSRSRSRSKSLSR* | 316 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja1g0375 | 315 | Coils | Coil | 313 | 315 | - | - | |
| Lja1g0375 | 315 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 176 | IPR035979 | GO:0003676 | |
| Lja1g0375 | 315 | CDD | RRM1_SF2_plant_like | 8 | 79 | - | - | |
| Lja1g0375 | 315 | Gene3D | - | 111 | 188 | IPR012677 | - | |
| Lja1g0375 | 315 | Gene3D | - | 2 | 110 | IPR012677 | - | |
| Lja1g0375 | 315 | MobiDBLite | consensus disorder prediction | 186 | 315 | - | - | |
| Lja1g0375 | 315 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 111 | 189 | IPR000504 | GO:0003723 | |
| Lja1g0375 | 315 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 76 | IPR000504 | GO:0003723 | |
| Lja1g0375 | 315 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 113 | 175 | IPR000504 | GO:0003723 | |
| Lja1g0375 | 315 | MobiDBLite | consensus disorder prediction | 79 | 108 | - | - | |
| Lja1g0375 | 315 | CDD | RRM2_SF2_plant_like | 111 | 186 | - | - | |
| Lja1g0375 | 315 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 3 | 276 | - | - | |
| Lja1g0375 | 315 | PANTHER | PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN | 3 | 276 | - | - | |
| Lja1g0375 | 315 | MobiDBLite | consensus disorder prediction | 230 | 267 | - | - | |
| Lja1g0375 | 315 | MobiDBLite | consensus disorder prediction | 87 | 102 | - | - | |
| Lja1g0375 | 315 | SMART | rrm1_1 | 112 | 185 | IPR000504 | GO:0003723 | |
| Lja1g0375 | 315 | SMART | rrm1_1 | 8 | 78 | IPR000504 | GO:0003723 | |
| Lja1g0375 | 315 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 82 | IPR000504 | GO:0003723 | |
| Lja1g0375 | 315 | MobiDBLite | consensus disorder prediction | 288 | 304 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja1g0375 | Lja-Chr1 | 3291061 | 3296223 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja1g0375 | 9 | 173 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 23.837 | 2.99e-08 | 53.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja1g0375 | K12890 | - | gmx:100789847 | 327.405 |