Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0370 ATGAAGTTCTGCAAAAAATACCAGGAGTACATGCAAGGCCAGGACCTGGAGAAGAAAAAGCTTCCTGCTGTTGGCTTCAAAAACCTCAAAAAGATCTTGAAAAAGTGCAGGAGAGACTGTGAATCTCTCTGTCAATCCCAGAAAAACATTCAAGCAGCTGAAGCTGCAGCCTCCCCTGGCCTCAGAACCTGCCCTGATCACTGCTCAGTGTGTGATGGGACCTTCTTCCCTTCCCTTCTCAATGAAATGTCAGAGATAGTTGGCAGCTTCAATCAGCGTGCACAGGAGTTACTGGAGCTGCATCTCGCTTCTGGCGTCAAGAAGTACATTTTCTGGTTCAAAGGCAAATTACGAGGGAATCACACTGCTCTAGTTCAAGAAGGACAAGATCTGGTCAATTATGCACTCATCAATGCCATTGCAATTCGAAAAATACTCAAGAAATATGATAAGATTCATTCTTCCAAGCAAGGGCAATTGTTCAAGTCTCAATTCCAGAGCATGCACAAGGAAATTCTTCAAAGCCCCTGGCTTTATGAGCTGATGGCTTTCCACATCAATTTACGGGAAACCAAGGTGGAGTCAAGCAAGGCACCTGCTTTGTTTGATCAATTTTTTCTCACATTTAAGGATGGAAAACCATCACTTACTTGTGAGCTCTTTGATTCTATCAAAATTGATATTGACTTGACCTGTCCTATATGCTTGGACACAGTGTTTGATCCAGTTTCACTGACTTGCGGCCATATATTCTGCTATATGTGTGCTTGCTCGGCTGCATCAGTATCTATTGTTGATGGACTTAAGTCAGCCGTTACTAAGCAGAAATGTCCTCTGTGCCGCGAGAATGCTGTCTATGAAGGTGCTGTGCACTTGGAAGAACTAAACATTCTGTTAGGCCGAAGATGTCCAGAATACTGGGAGCAAAGACTTCAGTCAGAGAGGGTAGAGAGGGTTAAGCAAATAAAGGAACATTGGGAATCACAGTGCAGAGCATTCCTGGGTGTATAA 1011 0.4372 MKFCKKYQEYMQGQDLEKKKLPAVGFKNLKKILKKCRRDCESLCQSQKNIQAAEAAASPGLRTCPDHCSVCDGTFFPSLLNEMSEIVGSFNQRAQELLELHLASGVKKYIFWFKGKLRGNHTALVQEGQDLVNYALINAIAIRKILKKYDKIHSSKQGQLFKSQFQSMHKEILQSPWLYELMAFHINLRETKVESSKAPALFDQFFLTFKDGKPSLTCELFDSIKIDIDLTCPICLDTVFDPVSLTCGHIFCYMCACSAASVSIVDGLKSAVTKQKCPLCRENAVYEGAVHLEELNILLGRRCPEYWEQRLQSERVERVKQIKEHWESQCRAFLGV* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0370 336 SUPERFAMILY RING/U-box 225 285 - -
Lja1g0370 336 Pfam Zinc finger, C3HC4 type (RING finger) 229 283 - -
Lja1g0370 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 336 - -
Lja1g0370 336 ProSitePatterns Zinc finger RING-type signature. 247 256 IPR017907 -
Lja1g0370 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 336 IPR033326 -
Lja1g0370 336 CDD SPX_BAH1-like 2 159 - -
Lja1g0370 336 ProSiteProfiles SPX domain profile. 1 163 IPR004331 -
Lja1g0370 336 SMART ring_2 232 280 IPR001841 -
Lja1g0370 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 334 IPR013083 -
Lja1g0370 336 ProSiteProfiles Zinc finger RING-type profile. 232 281 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0370 Lja-Chr1 3221538 3224910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0370 229 284 C3H Transcription Factor Family AT4G28270 39.344 1.61e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0370 K16275 - gmx:100797432 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0370 1 3221538 3224910 Lja1g0370 1 3221538 3224910 ECH