Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0368 ATGTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTGGCTCACTTCCTTCTCATGTTCATCCCCAGTCAAACAAGCCACAGGGGACACTTTCATCTCAACTCTCCCTCAATGGCTCACCTTCATTTTCCTCTCCCCCTGTCCCCAGAGAGCTCTGTTATCCGCAGTCAATGTTCTCCTCCTCCTTATTCTCTTCATCTTTGCAATCACAAAGCTCTTCAAAAGGTTCACTTCCAATGGAAACTCTCAAACTGAACTCAACAAGCCCCTCATCACCAATACCAGATCATTCCCCACAACAACAACTATACAGTTCAAACTAACCTTAACTGCAACCATTGTTCTCGCAGTACTGTACACTGTTTCCTTCATTCTGGCATTCACCAGTTCCACCGAAGCGCCATGGAAGCAAGTTGATGGTATATTTTGGTTAATCCAGGCCAAAACCCATGCAGCACTTGCTGTCTCAATCATCCATGAGAGAAGATTCAAAGCTCTCAAACACCCTGTGTCACTCAGAGTTTACTGGGTTGCGTTTTTCATCCTCATTTCCTTGTTCTCAGCTTCTGGGGTTATCCGTTTTGTAAATGAAGATGTGGGTTTCATCTTTAAGCTGGACGACGTGGTTTCTTTCATTTCACTCCCTCTCTCGCTGTTTCTTCTTTTTGTGGCGGTTCAAGGTTCCACCGGAGTTGTTGTTCCGGCAGAAGAAACAGAGCCAGTTGTGGACGAAGGTGCTGACGTGTACGGTGATGCTCCGAGCAAAACCGAGGTTACTGGCTACGCTTCAGCTTCTGTACTATCCAAGGCGTTTTGGATGTGGTTAAACCCTTTGTTGATTAAAGGGTACAAGTCACCATTGAAGATTGATGAGGTTCCAGTAATTTCACGGGAGCATAGAGCTGGGAGGATGATAGCACTGTTTGAATCAAATTGGCCTAAATCAAAAGACAAGGGGAAGCACCCAGTTGTAATCACTTTGATTAAGTGCTTCTGGAAGCAGTTAGCCTTCACTGCTTTACTTGCTATTGTGAAACTCTCTGTGGTGTATGTTGGGCCAGTTCTCATTCAGAGTTTTGTTGATTACACTGCAGGGAAGAGAACCTCTGTGTATGAAGGATACTACCTTGTTTTGATTCTTCTTGTTGCTAAGTTCATAGAAGTCATGTGCACTCACCATTTCAATTTCCAGGCCCAGAAGCTTGGGATGCTTCTAAGATCCACTCTTACACCTGCTTTGTATAAAAAGGGGTTATTGCTATCATTCTCTTCTCGGCAGGATCATGGTGTAGGGACAATTGTGAATTACATGGCAGTTGATACCCAACAACTCTCTGATATGATACTCCAGTTGCATTCTATATGGATGATGCCAATTCAAGTTTTTATTGGCTTAGTTTTGCTGTACAATTGTCTTGGTCCCTCAGTGGTTACCGCGTTGCTTGGACTTTCTGCGGTGCTCGCGTTCGCGGTGGTTACTACCCGCAGGCACAACACTTTCCAGTTCAACATGATGAAGAACCGCGACTCAAGAATGAAAGCTGTGAATGAGATGCTCAATTACATGCGTGTGATCAAGTTTCAGGCTTGGGAGGAACATTTCAATGGAAGAATCTTGGGTTTCCGCAGTTCGGAGTATCAATGGCTTTCAAACTTGATGTACTCGATTTGTGGAAACATGGTTCTGATGTGGAGCGCGCCATTGTTGATATCAACTATCACGTTTGGCACAGCTATTTTGCTTGGTGTTCCGCTTGATGCAGGGTCGGTTTTCACTGCAACAAGTATCTTCAGGATCATACAGGAACCGATAAGGACGTTCCCACAGTCTATGATATCTCTTACTCAAGCAACGATATCACTGGGGAGGTTAGATAGGTTCATGCTGAGTACAGAACTGTCCAATGACTCAGTTGAGAGAGAGGAAGGATGTGGTGGACAAACTGCAGTGGAAGTTATAGATGGGACCTTTTGTTGGGATGATGAGAACCTGCAAGAGGACTTGAAAAATATCAATTTGGAGATAAAAAAGGGGGAGCTTACAGCAGTTGTTGGGACTGTAGGGTCAGGAAAGTCATCTCTCCTCGCTTCAATTCTCGGGGAGATGCGCAATGTTTCAGGAAAGGTTCGGGTTTGTGGGAGTGTTGCTTATGTTGCACAAACATCTTGGATTCAGAACGGGACCATTGAAACAAACATACTCTTTGGTTTGCCAATGGAAAGACACAAGTATAATAAAGTTATCAAGGTGTGTTGCTTGGAGAAAGATTTGGAATTGATGGAATATGGTGATCAGACAGAGATTGGAGAGCGAGGTATCAACCTAAGTGGTGGCCAGAAGCAGCGTATACAACTTGCCAGGGCTGTGTATCAAGACTGTGATATATATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCTCATACTGGCTCTGAAATATTTAAGGAATGCGTGAGGGGAGCTCTGAAGGACAAGACCATTATTCTTGTAACACATCAAGTAGATTTCCTACATAACGTGGATCTTATTTTGGTGATGAGGGATGGTATGATAGTCCAATCAGGGAAATACGATGACCTACTAGGCTCCGGACTGGATTTTCAAGCTCTAGTAACTGCCCATGAGACCTCCCTGGAGCTGGTAGAGCAGGGTGCCGCCACACCGGGTGGAAATTTGAACAAACCAACAAAATCTCCAGAGGCACCTTCTGTTTACAATAGTGAAAGCAATTCTCCTGATCAGCCTGAATCTGACGAGAAAAGTTCTAAACTCGTCAAAGAAGAAGAGCGAGAAACTGGCAAAGTGAGCTTAAACATCTACAAACTCTACCTCACTGAGGCTTTTGGGTGGTGGGGTATCACAGGGTTAGTGTTTCTATCTTTGTTATGGCAAGCAACTTTGATGGCGAGCGACTATTGGCTGGCATATGAAACCTCAGAAGAGCGTGCTCAAATGTTTAACCCCTTCCAGTTCATTTCTGTCTACGCAATTATTACTCTTGTTTCGGTTATTGTGGTAGTGGTCAGATCCTACTCCTTTACATTCATGGGGCTAAAGACTGCACAACTTTTCTTCAAACAAATTCTCAATTGCATATTGCATGCGCCCATGTCTTTCTTTGATACTACGCCATCTGGGAGAATTCTAAGTAGGGCATCTGCTGATCAGACCAATGTTGATATCGTTCTCCCCATGTTCATCAACCTTGTTACTGCCATGTACATTACAGTGCTCGGCATCTTAATCATCACATGTCAAAATTCTTGGCCAACAGTGTTCTTGTTAATTCCTCTTGTTTGGTTGAATATATGGTACCGGGGTTACTTTCTTGCTTCGTCTCGTGAACTAACTCGCCTGGATTCAATTACCAAAGCACCTGTTATCAATCACTTCTCTGAAAGCATTGCGGGGGTCATGACAATCCGTGCATTTAGAAAGCAAAAACAGTTTTGTGAAGAAAATCTCAATCGGGTGAATGCTAATTTACGAATGGATTTCCACAACTATAGTTCCAATGAGTGGCTGGGGTTACGCTTAGAATTGCTTGGGAGCCTTGTCTTTTGCATTTCTACTATGTTCATGATTATCTTACCAAGCAATATCATTAAACCAGAAAATGTTGGTTTATCCCTCTCTTACGGGTTGGGCTTAAATGCTGTCTTGTTCTGGGCTGTATACTTCAGCTGTATCCTCGAAAACAAAATGGTGTCTGTTGAGAGGATAAAGCAGTTTACAAAGATTCCATCTGAACCAACATGGAATATCAAGGATCGTCTGCCTCCTCCATATTGGCCAGATCAAGGCAATGTAGATATCAAAGGCTTGGAGGTCAGATATCGTCCAAACACTCCTCTGATTCTTAAAGGCATTACTTTGAGCATTACTGGAGGAGAAAAGATTGGTGTTGTTGGTCGAACTGGGAGCGGAAAATCAACTTTAATCCAAGTTCTGTTCAGGCTGGTGGAACCTTCAGGAGGCAAAGTAATAATTGATGGTATTGACATATCCGTCTTGGGGCTTCATGATCTCAGATCTCGGTTCGGTATCATTCCTCAAGAGCCTGTCCTCTTTGAAGGAACTGTGAGAAGCAACATTGATCCAACTGGACAGTATACAGACGATGAGATGTGGAAGAGCTTGGAACGCTGTCAACTAAAAGAGGTGGTGGCTGCTAAGCCTGAAAAACTTGACTCTTTAGTGGTGGATAATGGAGAGAACTGGAGTGTGGGGCAGAGACAGTTGCTTTGTCTTGGGCGAGTTATGCTTAAGCGAAGCCGGCTCTTGTTTATGGATGAGGCAACTGCTTCTGTTGATTCTCAAACCGATGGCATAATTCAAAAGATCATTAGAGAGGACTTTGCAGCCTGTACCATCATCAGCATTGCTCACAGAATACCCACAGTCATGGACTGTGATAGAGTTTTAGTCATAGATGCAGGGCTAGTGAAAGAATTCGATAAGCCCTCCAACTTGCTTCAGAGACCATCTCTATTTGGGGCATTAGTTCAAGAGTATGCCGACCGCTCCACCGGACTATAA 4539 0.4384 MSSSSSSSSSSSWLTSFSCSSPVKQATGDTFISTLPQWLTFIFLSPCPQRALLSAVNVLLLLILFIFAITKLFKRFTSNGNSQTELNKPLITNTRSFPTTTTIQFKLTLTATIVLAVLYTVSFILAFTSSTEAPWKQVDGIFWLIQAKTHAALAVSIIHERRFKALKHPVSLRVYWVAFFILISLFSASGVIRFVNEDVGFIFKLDDVVSFISLPLSLFLLFVAVQGSTGVVVPAEETEPVVDEGADVYGDAPSKTEVTGYASASVLSKAFWMWLNPLLIKGYKSPLKIDEVPVISREHRAGRMIALFESNWPKSKDKGKHPVVITLIKCFWKQLAFTALLAIVKLSVVYVGPVLIQSFVDYTAGKRTSVYEGYYLVLILLVAKFIEVMCTHHFNFQAQKLGMLLRSTLTPALYKKGLLLSFSSRQDHGVGTIVNYMAVDTQQLSDMILQLHSIWMMPIQVFIGLVLLYNCLGPSVVTALLGLSAVLAFAVVTTRRHNTFQFNMMKNRDSRMKAVNEMLNYMRVIKFQAWEEHFNGRILGFRSSEYQWLSNLMYSICGNMVLMWSAPLLISTITFGTAILLGVPLDAGSVFTATSIFRIIQEPIRTFPQSMISLTQATISLGRLDRFMLSTELSNDSVEREEGCGGQTAVEVIDGTFCWDDENLQEDLKNINLEIKKGELTAVVGTVGSGKSSLLASILGEMRNVSGKVRVCGSVAYVAQTSWIQNGTIETNILFGLPMERHKYNKVIKVCCLEKDLELMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSEIFKECVRGALKDKTIILVTHQVDFLHNVDLILVMRDGMIVQSGKYDDLLGSGLDFQALVTAHETSLELVEQGAATPGGNLNKPTKSPEAPSVYNSESNSPDQPESDEKSSKLVKEEERETGKVSLNIYKLYLTEAFGWWGITGLVFLSLLWQATLMASDYWLAYETSEERAQMFNPFQFISVYAIITLVSVIVVVVRSYSFTFMGLKTAQLFFKQILNCILHAPMSFFDTTPSGRILSRASADQTNVDIVLPMFINLVTAMYITVLGILIITCQNSWPTVFLLIPLVWLNIWYRGYFLASSRELTRLDSITKAPVINHFSESIAGVMTIRAFRKQKQFCEENLNRVNANLRMDFHNYSSNEWLGLRLELLGSLVFCISTMFMIILPSNIIKPENVGLSLSYGLGLNAVLFWAVYFSCILENKMVSVERIKQFTKIPSEPTWNIKDRLPPPYWPDQGNVDIKGLEVRYRPNTPLILKGITLSITGGEKIGVVGRTGSGKSTLIQVLFRLVEPSGGKVIIDGIDISVLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTDDEMWKSLERCQLKEVVAAKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLFMDEATASVDSQTDGIIQKIIREDFAACTIISIAHRIPTVMDCDRVLVIDAGLVKEFDKPSNLLQRPSLFGALVQEYADRSTGL* 1513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0368 1512 CDD ABC_6TM_ABCC_D1 337 624 IPR044746 GO:0140359
Lja1g0368 1512 MobiDBLite consensus disorder prediction 913 927 - -
Lja1g0368 1512 CDD ABC_6TM_ABCC_D2 953 1245 IPR044726 GO:0140359
Lja1g0368 1512 Pfam ABC transporter 1287 1435 IPR003439 GO:0005524
Lja1g0368 1512 SMART AAA_5 1296 1489 IPR003593 -
Lja1g0368 1512 SMART AAA_5 677 858 IPR003593 -
Lja1g0368 1512 Gene3D ABC transporter type 1, transmembrane domain 311 629 IPR036640 GO:0005524|GO:0016021
Lja1g0368 1512 Gene3D ABC transporter type 1, transmembrane domain 916 1251 IPR036640 GO:0005524|GO:0016021
Lja1g0368 1512 SUPERFAMILY ABC transporter transmembrane region 324 628 IPR036640 GO:0005524|GO:0016021
Lja1g0368 1512 MobiDBLite consensus disorder prediction 885 927 - -
Lja1g0368 1512 Pfam ABC transporter transmembrane region 959 1206 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g0368 1512 Pfam ABC transporter transmembrane region 338 603 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g0368 1512 Coils Coil 1141 1161 - -
Lja1g0368 1512 MobiDBLite consensus disorder prediction 889 912 - -
Lja1g0368 1512 CDD ABCC_MRP_domain1 650 849 - -
Lja1g0368 1512 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 955 1233 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g0368 1512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1261 1503 IPR027417 -
Lja1g0368 1512 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1272 1504 IPR003439 GO:0005524
Lja1g0368 1512 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 650 873 IPR003439 GO:0005524
Lja1g0368 1512 SUPERFAMILY ABC transporter transmembrane region 950 1250 IPR036640 GO:0005524|GO:0016021
Lja1g0368 1512 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 336 616 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja1g0368 1512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 650 871 IPR027417 -
Lja1g0368 1512 ProSitePatterns ABC transporters family signature. 775 789 IPR017871 GO:0005524
Lja1g0368 1512 Gene3D - 1254 1502 IPR027417 -
Lja1g0368 1512 Pfam ABC transporter 668 801 IPR003439 GO:0005524
Lja1g0368 1512 Gene3D - 630 886 IPR027417 -
Lja1g0368 1512 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 96 1511 - -
Lja1g0368 1512 PANTHER ABC TRANSPORTER C FAMILY MEMBER 4 96 1511 - -
Lja1g0368 1512 CDD ABCC_MRP_domain2 1268 1488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0368 Lja-Chr1 3207173 3214506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0368 668 866 Calmodulin-binding Proteins AT2G36910 31.628 1.66e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0368 - K05666 gmx:100808752 2306.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0368 1 3207173 3214506 Lja1g0368 1 3207173 3214506 ECH