Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0349 ATGTCAAATATTTCAGGTGATGATGAAGGAAGTTTCTCATCAGGAAACAATGGGGAAGAAGTTCATCAAGAAACCAAGCAGCAACAGCTACTAAACCAACTCCATGACTCAAGTTCAGGAGCTTGCAATAGCAATGACTCCACTAATCAACAGCAAACCAAGAAGAAAAGAAACCTACCAGGGAATCCAGATCCTAATGCTGAAGTTGTTGCTTTATCACCAACCACATTAATGGCAACAAATAGATTCCTCTGTGAGATCTGCAACAAAGGGTTTCAGAGGGATCAAAACCTTCAGTTGCACCGAAGAGGTCACAATCTTCCTTGGAAGCTCAAGCAAAGAACAAGTAATGAGGTGAAGAAACGGGTGTATGTGTGCCCTGAGCCATCATGCGTCCACCATAACCCTGCTCGTGCATTAGGAGACCTCACTGGCATAAAAAAGCACTACAGCCGCAAACATGGTGAGAAGAAATGGAAATGTGACAAGTGCTCCAAAAGATATGCAGTCCAATCTGATTGGAAGGCCCACCAGAAAACATGTGGTACTAGGGAGTACAAATGTGATTGTGGAACCATATTTTCCAGGAGAGACAGTTTTATCACCCACAGAGCATTCTGTGATGCATTAACTGAAGAAAACAACAGAGTGAACCAGGGATTAACTAGTGGCATGCCACAAAACATGCAAAGTCAAATGCCGGATCTCATGTCCACTATGCCCCTAAGAGGAACTAGCTCCAACACTGCATCAGAATTCAATGACTATGACCCTAAGACCTCACTCAGATCACCAACACAAGAGCTCGTCCCAACGCAGTTCAGGTCCATGAGTATGGGTGGTGGCATGTTCTCCACCAATGCAGGCGCACTTTTTGGTGGTCCAAGAAGCATGCCTCCCTCTTCTTCCAGTCTTCAGCTTAGTTCACACACCGCCTCCGGCATCAATTACTTGCAAGACAGCAAAAATGGAGGACTAATGTCTGCTACAGCTCAGATGTCAGCAACAGCTTTACTTCAGAAAGCAGCACAAATGGGTGCCACTGCAAGCAACAGTGTTAACTCTCCAATGATGCAAAAAAGCTATGTTAGCAGCATGGCTGGTCCTGATCATGTTTCTTCCATTACTAGACCACAATATTCTGGTGCCATCTTGCAGCCGCAAAATCACCACTCATATGACCACTTCCCTCCACAGCCTGATCTATCTAACATTGGTGGAGGATTCACCAACCACTTGTTTCAGAAAGGACACCAAGAACTCTCTCAACTGTTTGATACTAACACTAGTGGAACAACCACAGTTAATGATGATGTTGGAAATTTCAACCAAATGTCCATGAGAAGTGAGCAAAACAGAGGATTGATGAAGAGTGTGGAAGAAGAGGTTTGTGATTTTACAAGTTTGATCCATGGAAGAGATGTGGCAGAAGGTAACCATCACCCAATGGAGCCAACAAGGTTTGGAGGGAGTGACAATATGACAAGGGTTCATGACTTCTTGGGCATAGGGGGTTCAACTTCAAGAGCAGGAGTGACTTTGCAGCATGAACCTCAGCAGCAACAGCAGCAGCAGCAAACAATGGAAATTATGAATCACTTTCATCACCATGTTCCACATGAGGGTTCAGCTATGGAGAAACCCATTTGGGATGTTTGA 1659 0.4454 MSNISGDDEGSFSSGNNGEEVHQETKQQQLLNQLHDSSSGACNSNDSTNQQQTKKKRNLPGNPDPNAEVVALSPTTLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSNEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPQNMQSQMPDLMSTMPLRGTSSNTASEFNDYDPKTSLRSPTQELVPTQFRSMSMGGGMFSTNAGALFGGPRSMPPSSSSLQLSSHTASGINYLQDSKNGGLMSATAQMSATALLQKAAQMGATASNSVNSPMMQKSYVSSMAGPDHVSSITRPQYSGAILQPQNHHSYDHFPPQPDLSNIGGGFTNHLFQKGHQELSQLFDTNTSGTTTVNDDVGNFNQMSMRSEQNRGLMKSVEEEVCDFTSLIHGRDVAEGNHHPMEPTRFGGSDNMTRVHDFLGIGGSTSRAGVTLQHEPQQQQQQQQTMEIMNHFHHHVPHEGSAMEKPIWDV* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0349 552 Gene3D Classic Zinc Finger 138 217 - -
Lja1g0349 552 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 529 - -
Lja1g0349 552 SUPERFAMILY beta-beta-alpha zinc fingers 82 180 IPR036236 -
Lja1g0349 552 SMART c2h2final6 124 154 IPR013087 -
Lja1g0349 552 SMART c2h2final6 83 105 IPR013087 -
Lja1g0349 552 SMART c2h2final6 159 179 IPR013087 -
Lja1g0349 552 MobiDBLite consensus disorder prediction 1 59 - -
Lja1g0349 552 Gene3D Classic Zinc Finger 62 129 - -
Lja1g0349 552 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 529 - -
Lja1g0349 552 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Lja1g0349 552 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Lja1g0349 552 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0349 Lja-Chr1 3049811 3053670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0349 54 350 IDZ Gene Family AT3G50700 55.556 1.59e-111 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja1g0349 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0349 - - gmx:100782774 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0349 1 3049811 3053670 Lja1g0349 1 3049811 3053670 ECH