Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0348 ATGGACCTCTGGAACGACGATTTCTCACAGCTCGAGATTGGGACTACCGTCGACTCGCTTCAGAGTTTTTTGGCTTCGCAGAGAGAACTCTTCCAAAGCCAGATCGACCAGTTTCAGCATATCGTTGTCACACAATGCAACCTCACCGGCGTCAATCCTCTCTCCCAAGAAATGGCAGCTGGAGCTCTGTCAATAAAAATTGGAAAAAGACCCAGGGATTTGTTAAATCCCAAGGCTGTAAATTACATGCAATCAGTTTTTTCCATTAAGGATGCAATTAGCAAGAAAGAATCTCGCGAGATCAGTGCTATGTTTGGTGTCACAGTCACTCAGGTTCGTGACTTCTTCACTAGTCAACGTTCAAGAGTGAGGAGACTAGTTCAGTTGTCAAAGCAGAGGGCATTAAGGTCTAGTTCTTGTGAAGAGCCTCATGGTGAGCAAATAAACTCCGATCATGTGAGACCAATAAATCCACCTCTCTTAGACACTGCTGGCTCCACCAATGCTGAAGAAACATCTTGTTCAACACAGGAAGCGGCTTTGTCTGACCTAGATGACTCAGATAAACACTTTGTTGAGAACATTTTTAGTCTAATTCAGAAAGAGGAAACATTTTCTGGGCAGGAGAAATTGATGGAGTGGATATTGACGATACAGAATTTCTCAGTATTGTCTTGGTTTTTGACGAAAGGGGGTGCAATGAGTTTAGCAACTTGGTTGAATAAAGCAGCTGTTGAAGAGCAAACAAGTGTCCTTCTTCTTATCTTGAAGGTACTTTGTCATTTGCCTTTACATAAAGCCCTTCCAGCACACATATCAGCTATATTGCAGAGTGTTAATGGACTACGCTTCTATAGGACACAAGACATATCAAACAGGGCAAGGGTTTTGTTATCCAAGTGGAGCAAACTATTAGCAAGGAACCAAGCATTAAAGAAACCTAATGGTGTTAAAACTTCTGGTGAAAAACAGATGATGCTTTCTCATAGGCAAGCTTCTGAATCATGGCATTCAAATATTGATCTTCCTGAAGACATCCTTGCTCCTTCAAATGAATATTCGGATAATTTCAGGAAACTGGAACCTCTTCAAGCTCTGAAACTTTTGCCACCCTCAGATGATTCTCATAAGAAGCCCACCCTCGGCGTATCTTCATCTCATGCCAGAGAGCGCAGAAAAGTACAATTGGTGGAACAGCCGGGCCAAAAATCAGTGAGCAGAAGCCCACAGGTTGCTAGAGTAGCGCCTGTAAGTCAAAGTCGTCCCATGTCTGCTGATGATATCCAGAAAGCAAAATTGCGTGCATCATTTATGCAGAGTAAGTATGGGAAAACTGGTTCTTCAAAAGAAAGTAAAGAACCAAAAATTGTTAGTCTGAATAAACCTCAGACAAATCAGGTCAGTATTGCAGTTTCCTCTTCTAAAGTCCATGTTCCACCCAAAATTGAAGAAGACAAGAAGCCTCCGGTTCTTCCCTCTAAAAACACTATCAGGCTGGATGCTTCTTATTCTAAATTGAAAATGGATTTGAAGGAATCTCCGTGGGAGAAGTGCAAGAGGGTGCAAATACCGTGGAAAACACCAGCAGAGGTGAAACTTAATGATACCTGGAAAGTTGGCAATGGTGAAAATAGCAAGGAGGTTGATGTCCAGACAAACAGACACCGCAGGGAAAAAGACACTATTTATCAGACTATCAAAGAGATGCCATCCAACCCGAAGGAGCCATGGGACCTCGAAATGGATTATGATGACACCTTGACACCAGAAATTCCTATTGAACAGCTACCAGACGGTGATAGTGCAGAAGTAGTAGCTACCCCCAATGATGTTGCAACTCATGCTGTTCAAAGCGTGGCGTCCACATCCTCAACTGGCAACGCAGCTCCGGCCGAACCTGATTTAGAATTGCTTGCTGTACTGCTAAAAAATCCGGAGTTGGTATTTGCCTTAACTTCTGGACAAGCCGGTAACATACCAAATGAGGAAACAATGAAGCTGCTTGACATGATCAAGAGAAGTAGTGTGAACTTGGGTTTAGGTGAAAATACAAATGGCAATCTCAGCAATAATGCAAAGTCTCCGGAGACGGTGGAAGTTTCTCTCCCATCTCCAACTCCTTCAAATGATCCAAGAACGAATGGATGGAGCACAGAAGCATCAAAGAATCCTTTTACACGGCGAGGTATGGCGCCTGACAGAATTATCCAGAACTCTGCTGCAGTTGCCACCACCAACTTATTAAGGCAACAGTCAACAGTTGTGGTTCCACCTTCAAATCATCTCACAAGCTCAGCAGTTTCTCCATATTCACTGCCTCATGCAGCTAATTTCATTCCTGAAAAGCAACCAGCACCCACTCTTTCCTCTGTGCACGTACAAGCACAATCCTCGGATTTCGGTTTAACCATGAAGAAGAACATAACCACTGCAAATGCGGCTTCAGTTAACTTACAGGGGACACATTCGCATCTAGAATTGCGGTCTGATACCAGGAGTTATGTAAAACCAGTAGCTAATTTGAGTGTACGAGAAGGTTTGTCTAATTCATTACCACAATCCTTCATGTTGACCTCAAGAACACCATCTCACCCAGCCACACAACAACAAAGACATCATCCACATTTGCTCCATCAGGCCCATTTCACTGAACCTTCCTATCGTAACCCTGTCCAGTCCTATCCACCACAAATTGAAAAACCTGGTCCGTCAGATTTGTGGAGAGAAAGGCAGGATGTGTCATCCAGTTATCATTCTCAAAGAATTCATAACAACTACAACACATTGATTGGGGAATCCATGCAATCTGGTTCTTATGATAGAAATAATGATGGAAGTGAAGGTTTCGAAACATGGAGTCCGGAAAATAGTCCAACTAGAAATCCTAGGTATGTTCCAGGTAGAAATTTCCCAGAGTCCAGAATGAATAATGTAAGAAATCCTAGACATGAATGGTCAAGGCAACGGGGTTCTTCTGGAAACTGGGGCCCTGACAGGCATGGGAACAAAAGGTGGAATGATCAGAGACGATGA 3033 0.4316 MDLWNDDFSQLEIGTTVDSLQSFLASQRELFQSQIDQFQHIVVTQCNLTGVNPLSQEMAAGALSIKIGKRPRDLLNPKAVNYMQSVFSIKDAISKKESREISAMFGVTVTQVRDFFTSQRSRVRRLVQLSKQRALRSSSCEEPHGEQINSDHVRPINPPLLDTAGSTNAEETSCSTQEAALSDLDDSDKHFVENIFSLIQKEETFSGQEKLMEWILTIQNFSVLSWFLTKGGAMSLATWLNKAAVEEQTSVLLLILKVLCHLPLHKALPAHISAILQSVNGLRFYRTQDISNRARVLLSKWSKLLARNQALKKPNGVKTSGEKQMMLSHRQASESWHSNIDLPEDILAPSNEYSDNFRKLEPLQALKLLPPSDDSHKKPTLGVSSSHARERRKVQLVEQPGQKSVSRSPQVARVAPVSQSRPMSADDIQKAKLRASFMQSKYGKTGSSKESKEPKIVSLNKPQTNQVSIAVSSSKVHVPPKIEEDKKPPVLPSKNTIRLDASYSKLKMDLKESPWEKCKRVQIPWKTPAEVKLNDTWKVGNGENSKEVDVQTNRHRREKDTIYQTIKEMPSNPKEPWDLEMDYDDTLTPEIPIEQLPDGDSAEVVATPNDVATHAVQSVASTSSTGNAAPAEPDLELLAVLLKNPELVFALTSGQAGNIPNEETMKLLDMIKRSSVNLGLGENTNGNLSNNAKSPETVEVSLPSPTPSNDPRTNGWSTEASKNPFTRRGMAPDRIIQNSAAVATTNLLRQQSTVVVPPSNHLTSSAVSPYSLPHAANFIPEKQPAPTLSSVHVQAQSSDFGLTMKKNITTANAASVNLQGTHSHLELRSDTRSYVKPVANLSVREGLSNSLPQSFMLTSRTPSHPATQQQRHHPHLLHQAHFTEPSYRNPVQSYPPQIEKPGPSDLWRERQDVSSSYHSQRIHNNYNTLIGESMQSGSYDRNNDGSEGFETWSPENSPTRNPRYVPGRNFPESRMNNVRNPRHEWSRQRGSSGNWGPDRHGNKRWNDQRR* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0348 1010 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
Lja1g0348 1010 Gene3D - 68 125 - -
Lja1g0348 1010 MobiDBLite consensus disorder prediction 383 397 - -
Lja1g0348 1010 MobiDBLite consensus disorder prediction 682 727 - -
Lja1g0348 1010 MobiDBLite consensus disorder prediction 682 724 - -
Lja1g0348 1010 MobiDBLite consensus disorder prediction 368 425 - -
Lja1g0348 1010 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 223 313 IPR035441 -
Lja1g0348 1010 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 1010 - -
Lja1g0348 1010 MobiDBLite consensus disorder prediction 137 172 - -
Lja1g0348 1010 SUPERFAMILY Homeodomain-like 69 131 IPR009057 -
Lja1g0348 1010 PANTHER HOMEOBOX PROTEIN LUMINIDEPENDENS 1 1010 - -
Lja1g0348 1010 MobiDBLite consensus disorder prediction 932 1010 - -
Lja1g0348 1010 MobiDBLite consensus disorder prediction 932 963 - -
Lja1g0348 1010 MobiDBLite consensus disorder prediction 399 425 - -
Lja1g0348 1010 CDD homeodomain 69 125 IPR001356 GO:0003677
Lja1g0348 1010 SMART HOX_1 68 130 IPR001356 GO:0003677
Lja1g0348 1010 MobiDBLite consensus disorder prediction 886 920 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0348 Lja-Chr1 3034622 3043640 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0348 474 728 Homeobox Transcription Factor Family AT4G02560 45.312 1.51e-49 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0348 - - gmx:100806633 1440.25