Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0345 ATGGTGGAGAAGAGGAGGAAGCCTCTGATTCTCTGTTCCACCAAACATGTCATCAATTCCTTATTAGGATCTTCATCTTCTCCCCCAAACAACAACCATGAATCTTCTCCCAATTTCCACTTACCTGTTGGAATTCTTCAATCCTCCAATAAACCTCAATTCCCTTCTTCTCTTGACCACTCTGCACTCCTTGGCCTCTCCACTTCTCTTCTCAAGAGGCTCTCCATAACTTCAGGCTCACCGGTTTTGATCAAGAATACTGAGATGAAGATACAGAGAATTGCAGTTGCCATTGCTCTTGACCCTCCTGGCATCACCACTGAAACTGGGTCACCCTCTTCTTCTCGAATAATGCTTGTTTTACCTTGTTGTGATTTCCCTTGCAGTGGGTTGAATGGTGAAGTTGCTTATTTATCTCCTATTTTGGCTTTTAATCTTAACTTGCACGTTGCTTGCTTAAAATCCATTCTGCGCCATGGGCAAGATGCTTTAGCATCTTATTTCAATCCTCAAGGTCAAAAGGGTGATGAGGATGCTGATAATAGCATTGAGGATGATTCTGTCATTAAGGTAGAATTGGCACCTCTTGGACAACCTCCGAGATTTGCCTCACTTTTGAGGGTTGCTTTTGTGAAGATACCAGAATGTGGCATTCTTGAATCTATTAGATCAAGTTCACCTGTTGAATCCCAAGAGCGGCAAGACATGATTGATTTGGCGTTGCAAAAGTACTTTGAAGTGGATAGGTATTTGTCAAGTGGAGATGTTTTTGGAATTAACATTAGTTGGAACTGCAATTCCACTATTTGCATTCCCTGCAACCAGAAACCACAAGGGAAAAATGATGAACTTATCTATTTCAAGGTCATTGCTATGGAACCATCAGATGAACCGGTTCTCCGTGTCAATAAAACATTGACTGCTCTGGTGCTAGTAGGGAGTTCCCCATCCCCCCTTCCTCCAGATTTGTTAGTTGCTGGAAAGGGAGGGCCTGTCCCTTTGCAAAGAGACTTAGTGAAGACCTTGGCTTCAATACTTACTCCAACTTTCTGTCCATCCGCGCTTTCTTCCAAGTTCAGAGTTTCAGTTCTCTTGTATGGCTTGGCAGGTTGTGGGAAAAGGACGGTCATTAGATATGTTGCTCGTCGACTAGGCCTGCATGTGGTGGAATATAACTGTCACGATCTACTGGCGTCTGACAAAACATCTGTTGCTCTAGCTCAAGCTTTCAAGACAGCTCGAAGATACTCGCCAGCTATACTTCTTCTCCGTCATTTTGATGTTTTTCGAGATTCAAATTCGCCTGATGGTTCTCTAAATGATCAAAGAGGAAATACAGCTGAAGTTGCATCAGTCATTAGGAAATTCACTGAGCCAGTTAGTGAACGTGGTGATGGCAACTCCCTGGTGACATCAAATGGTGAATTGGTGGAGAAGAATGCTGAAAAGACAAGCGGGCAGATCCTGTTGATTGCTGCTGCTGACAGTTCAGAAGGTCTACCTTCAACTATCAGACGCTGCTTTAGCCATGAACTAAGCATGGGGTCTTTGACTGAAGAGCAAAGGGCTGAGATGCTATCCCAGTCACTGCAGAGTGTTTCTGGACTCCTCTCTGATACTGATTCAGAGGGTTTTGTAAAAGAAATAGTTGGGCAAACATCTGGTTTCTTGCCCAGGGATATGTGTGCTTTAATCGCTGATGCTGGTGCCAACTTATTTCCCAGGAGCAATGCTGAAGTAGACAAAGATGGATCTGAAGATGTAGATAGTTCTCTTACTTCCGGGATGATTGAGGATAACAATAAGTCGAAAGTTTCACCTCGGATTCCTGGGAAAGAAGACGTGATGAATGCTTTAGAAAGATCAAAAAAGAGAAATGCATCTGCATTGGGCACTCCAAAGGTTCCAAATGTGAAATGGGAAGATGTAGGTGGGCTTGAAGATGTCAAAAAATCCATCCTAGATACTGTTCAGTTACCTCTCCTGCATAAAGATCTATTTGCATCTGGATTACGCAAGCGGTCTGGTGTTCTTTTATATGGTCCCCCTGGAACAGGAAAAACATTATTAGCAAAAGCTGTTGCTACAGAATGTTCCTTAAATTTTCTTAGTGTGAAAGGACCTGAACTGATCAACATGTACATAGGAGAGTCTGAGAAGAATGTCCGGGACATTTTCCAGAAGGCCAGATCAGCACGTCCATGTGTCATCTTCTTTGATGAGCTTGATTCTCTTGCACCAGCTCGGGGTGCTTCAGGAGATTCTGGTGGTGTTATGGACAGAGTGGTTTCTCAGATGCTTGCAGAGATTGATGGCTTAAGCGATTCAAGTCAGGATCTATTTATTATAGGTGCAAGTAATAGGCCAGATTTGATAGACCCAGCACTTCTGCGTCCTGGTCGATTTGATAAGCTGTTATATGTTGGAGTTAACTCTGATGCATCTTACAGAGAACGGGTCTTGAAAGCTCTTACCCGAAAGTTTAAATTGCATGAGGATGTTTCACTTTACTCTATAGCGAAAAAATGTCCACCAAATTTCACTGGTGCGGACACGTACGCCTTGTGTGCAGATGCTTGGTTCCATGCTGCGAAGCGCAAGGTTTTGAGTGCAGATCCAGAGTCATCCAGCCAAGACAATGAAGCTGATTCTGTTGTTGTTGAACACAATGATTTTGTCCAGGTCTTAGTTGAGCTTCAGCCTTCCCTCTCCATGGCTGAGCTTAAGAAGTATGAGCTACTGAGAGATCAGTTTGAAGGCACCTCAAAATGA 2772 0.4343 MVEKRRKPLILCSTKHVINSLLGSSSSPPNNNHESSPNFHLPVGILQSSNKPQFPSSLDHSALLGLSTSLLKRLSITSGSPVLIKNTEMKIQRIAVAIALDPPGITTETGSPSSSRIMLVLPCCDFPCSGLNGEVAYLSPILAFNLNLHVACLKSILRHGQDALASYFNPQGQKGDEDADNSIEDDSVIKVELAPLGQPPRFASLLRVAFVKIPECGILESIRSSSPVESQERQDMIDLALQKYFEVDRYLSSGDVFGINISWNCNSTICIPCNQKPQGKNDELIYFKVIAMEPSDEPVLRVNKTLTALVLVGSSPSPLPPDLLVAGKGGPVPLQRDLVKTLASILTPTFCPSALSSKFRVSVLLYGLAGCGKRTVIRYVARRLGLHVVEYNCHDLLASDKTSVALAQAFKTARRYSPAILLLRHFDVFRDSNSPDGSLNDQRGNTAEVASVIRKFTEPVSERGDGNSLVTSNGELVEKNAEKTSGQILLIAAADSSEGLPSTIRRCFSHELSMGSLTEEQRAEMLSQSLQSVSGLLSDTDSEGFVKEIVGQTSGFLPRDMCALIADAGANLFPRSNAEVDKDGSEDVDSSLTSGMIEDNNKSKVSPRIPGKEDVMNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFASGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYSIAKKCPPNFTGADTYALCADAWFHAAKRKVLSADPESSSQDNEADSVVVEHNDFVQVLVELQPSLSMAELKKYELLRDQFEGTSK* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0345 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 636 917 IPR027417 -
Lja1g0345 923 CDD AAA 661 809 - -
Lja1g0345 923 PANTHER PEROXISOME ASSEMBLY FACTOR 2 24 919 - -
Lja1g0345 923 Pfam ATPase family associated with various cellular activities (AAA) 677 809 IPR003959 GO:0005524|GO:0016887
Lja1g0345 923 Pfam ATPase family associated with various cellular activities (AAA) 363 512 IPR003959 GO:0005524|GO:0016887
Lja1g0345 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 331 583 IPR027417 -
Lja1g0345 923 SMART AAA_5 673 813 IPR003593 -
Lja1g0345 923 SMART AAA_5 359 518 IPR003593 -
Lja1g0345 923 MobiDBLite consensus disorder prediction 580 610 - -
Lja1g0345 923 CDD AAA 353 423 - -
Lja1g0345 923 Gene3D - 811 897 - -
Lja1g0345 923 ProSitePatterns AAA-protein family signature. 780 798 IPR003960 GO:0005524|GO:0016887
Lja1g0345 923 PANTHER AAA-FAMILY ATPASE 24 919 - -
Lja1g0345 923 Gene3D - 332 534 IPR027417 -
Lja1g0345 923 Gene3D - 635 912 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0345 Lja-Chr1 2997462 3003707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0345 634 919 Calmodulin-binding Proteins AT3G56690 42.857 1.35e-61 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0345 K13339 - gmx:100820183 1452.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2734 5 54222848 54223445 Lja1g0345 1 2997462 3003707 PCT