Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0344 ATGGTGTCCCTGAAACTGCAGAAGCGGCTTGCAGCCAGCGTGCTCAAATGCGGAAGAGGGAAGGTTTGGCTTGATCCCAATGAATGCAATGAAATCTCCATGGCCAATTCTCGCCAGAACATTAGGAAATTGGTTAAGGATGGATTTATTATCAGGAAGCCCACCAAGATTCATTCCCGGTCACGAGCTCGCAGGATGAAGGAGGCTAAGAGGAAGGGTCGCCACTCTGGATATGGTAAGCGTAAGGGTACAAGAGAGGCAAGGCTTCCCACCAAAATACTTTGGATGAGGAGGATGCGTGTGCTCAGAAGATTGCTCCGTAAGTACAGGGAGTCCAAGAAAATTGACAAGCACATGTACCATGATATGTACATGAAGGTGAAGGGTAATGTTTTCAAGAACAAGAGAGTCTTAATGGAAAGCATTCACAAGTCGAAGGCTGAGAAGGCCAGAGAGAAGACTCTGTCTGATCAGTTTGAGGCGAAGCGTGCCAAGAACAAGGCAAGCAGGGAAAGGAAGCTTGCTAGGAGGGAGGAGCGCTTGGCCCAGGGTCCTGGCGATAAACCATCAGCAACACCCAGTGCTGAACCTGCTCCAGCACCTAAAGCTGCCCAAGCACCAAAGAAATCCAAGAAGTGA 639 0.493 MVSLKLQKRLAASVLKCGRGKVWLDPNECNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGPGDKPSATPSAEPAPAPKAAQAPKKSKK* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0344 212 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Lja1g0344 212 PANTHER 60S RIBOSOMAL PROTEIN L19 1 212 IPR039547 GO:0003723|GO:0003735|GO:0022625
Lja1g0344 212 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lja1g0344 212 Gene3D - 57 187 - -
Lja1g0344 212 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lja1g0344 212 MobiDBLite consensus disorder prediction 57 79 - -
Lja1g0344 212 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Lja1g0344 212 MobiDBLite consensus disorder prediction 149 184 - -
Lja1g0344 212 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Lja1g0344 212 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lja1g0344 212 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Lja1g0344 212 PANTHER RIBOSOMAL PROTEIN L19 1 212 - -
Lja1g0344 212 Coils Coil 161 181 - -
Lja1g0344 212 MobiDBLite consensus disorder prediction 57 85 - -
Lja1g0344 212 MobiDBLite consensus disorder prediction 149 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0344 Lja-Chr1 2994109 2995938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0344 1 197 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 87.817 1.61e-127 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0344 K02885 - tcc:18603557 348.591