Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0332 ATGGATGGGATTGGACACTCTGCACCTGCAACTGCAACTGAAGGGAGAGGGGGCTTTGGGAAAATGCATTACGGATGCCGGCACTATAAGAGACGATGCAGAATTCGTGCCCCATGCTGCAATCAGATCTTCCATTGTCGTCACTGCCACAACGATGCCATGAGTTCATCTAGCGACCCTAAGGATCATCATGAACTAGTAAGATCCGATGTTAAGCAGGTTATATGTTCTGTATGCGATACTGAACAAGAGGTGGCCAAGGTGTGTTCTAATTGTTGTGTCAACATGGGAGAATACTATTGCGAGATTTGCAAATTCTATGATGATGATACGGATAAAGGACAATTCCATTGTGATGAATGTGGGATTTGCAGGGTTGGTGGTCGTCATAACTTCTTTCACTGTAATAAATGTGGATCCTGCTATTCAGTGGTCTTGCAAAACAATCACTTATGCGTAGAGAACTCAATGAAGAGCTCCTGCCCGGTCTGTTTTGAGTACCTATTTGATTCAACAAAAAGCACCACAATTATGAGGTGCGGACACACAATGCATACTGAATGCTTTACAGAAATGGTAACTCAAAATCAGTATCGGTGTCCTATCTGCTTGAAGACAATAGCTGATATGTCTCAGACCTGGGCACTTCTTGATTGGGAGGTTGGAGCTATTCCCATGCCTAATGAGTATCATTATGAGGTTCCAATTCTGTGCAATGATTGTAACTCTACCAGCTCGATTTCCTTTCACATATCTGGTCTCAAGTGCAGACAATGCGGTTCGTATAACACCCGTAGGGTTTCGACACCCGAACAATGA 819 0.4371 MDGIGHSAPATATEGRGGFGKMHYGCRHYKRRCRIRAPCCNQIFHCRHCHNDAMSSSSDPKDHHELVRSDVKQVICSVCDTEQEVAKVCSNCCVNMGEYYCEICKFYDDDTDKGQFHCDECGICRVGGRHNFFHCNKCGSCYSVVLQNNHLCVENSMKSSCPVCFEYLFDSTKSTTIMRCGHTMHTECFTEMVTQNQYRCPICLKTIADMSQTWALLDWEVGAIPMPNEYHYEVPILCNDCNSTSSISFHISGLKCRQCGSYNTRRVSTPEQ* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0332 272 SUPERFAMILY RING/U-box 160 210 - -
Lja1g0332 272 Pfam Ring finger domain 160 203 IPR001841 -
Lja1g0332 272 ProSiteProfiles Zinc finger CTCHY-type profile. 96 160 IPR017921 -
Lja1g0332 272 Gene3D - 231 271 - -
Lja1g0332 272 ProSiteProfiles Zinc finger CHY-type profile. 19 94 IPR008913 GO:0008270
Lja1g0332 272 SUPERFAMILY Zinc hairpin stack 97 154 IPR037275 -
Lja1g0332 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 206 IPR013083 -
Lja1g0332 272 SUPERFAMILY CHY zinc finger-like 21 95 IPR037274 GO:0008270
Lja1g0332 272 SMART ring_2 161 203 IPR001841 -
Lja1g0332 272 ProSiteProfiles Zinc finger RING-type profile. 161 203 IPR001841 -
Lja1g0332 272 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 19 267 - -
Lja1g0332 272 Pfam Zinc-ribbon 209 265 IPR039512 -
Lja1g0332 272 Pfam CHY zinc finger 26 106 IPR008913 GO:0008270
Lja1g0332 272 PANTHER ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN 19 267 IPR031109 GO:0008270|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0332 Lja-Chr1 2914842 2918324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0332 21 269 C2H2 Transcription Factor Family AT3G18290 39.608 2.92e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0332 K10144 - gmx:100818374 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0332 1 2914842 2918324 Lja1g0332 1 2914842 2918324 ECH