Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0328 ATGGCCTTGGTTAATGCCCTTTTCATTCTCATGATGCTGCTGATTTTACCCTCATCATCCAAGTCCTTCTCAGATGAAATTCCCTCAGAAATCCAAACCCAAGACATGCAAGCCTTGATTGCACAAGCCTGCATGGACATTGAAAACCAAAACTCATGCCTCCAAAACATTCACAATGAGCTCACCAAGATTGGCCCTCCAAGCCCTACTTCAGTCCTGAGCGCTGCGCTCAGGACCACCCTCAATGAAGCACAAGGCGCCATTGACAACTTAACAAAGTTCAGCACATTCTCCGTCAGCAACCGCGAGCAAATAGCCATAGGAGATTGCAAGGAGCTCGTTGATTTCTCTGTCTCTGAGCTGGCATGGTCATTAGGGGAGATGAGGAGAATCCGAGCAGGTGACACAAGCGTGCAATATGAGGGAAACCTAGAAGCTTGGCTAAGTGCAGCACTCAGTAACCAAGATACTTGCCTTGAAGGCTTTGAAGGAACTGATAGGCGTCTTGAGAGCTACATCAGTGGAAGCTTAACACAAGTCACACAGCTTATTAGCAATGTTCTGTCTTTGTACACTCAACTTCATGCCTTACCCTTCAGGCCTCCGAGGAACAATACTCATAAAACAAGTGAAAGTTTGGATTTGGATTCGGAGTTTCCTGAGTGGATGACTGAGGGTGATCAAGAGCTCCTTAGATCCAAGCCGCACCGTTCGCGTGCAGACGCGGTTGTGGCATTGGATGGGAGCGGTCACTACCGCACAATCACAGAAGCTGTGAATGCAGCACCGAGTCATAGCAACAGGAGGTATGTTATATATGTGAAGAAGGGACTCTACAGGGAGAATGTGGACATGAAGAGGAAGATGACCAATATTATGCTCGTTGGTGATGGTATTGGCCAAACCATCATCACAAGCAACCGGAATTTCATGCAAGGATGGACCACTTTTCGGACTGCCACAGTTGCTGTATCTGGGAAAGGTTTCATTGCGAGGGACATGTCATTCAGAAACACTGCTGGTCCAGTAAACCACCAAGCTGTGGCACTGCGTGTTGATTCAGACCAATCCGCATTCTACAGGTGCAGCATTGAAGGCTTCCAAGACACCCTCTACGCCCACTCCCTCCGACAGTTCTACCGCGAATGTGAAATCTACGGCACCATAGACTTCATCTTTGGCAATGGCGCGGCGGTGCTGCAAAACTGCAAGATCTACACCAGGGCCCCACTTCCATTACAGAAGGTAACCGTCACGGCCCAAGGAAGAAAAAGCCCACACCAGAGCACCGGGTTTACGATCCAAGATAGCTTCATTCTTGCGACCCAGCCCACGTATTTGGGCCGGCCCTGGAAGCAGTACTCGAGGACGGTTTACATTAACACGTACATGAGTGGGATGGTGCAACCTCGAGGTTGGCTCGAGTGGTTTGGGGACTTTGCCTTGACCACATTGTGGTATGGTGAGTATAGGAATTATGGACCTGGCGCTTCGCTCGCAGGCCGGGTCAAGTGGCCCGGTTATCATATCATGAAAGATGCTGCTACTGCTAGCTATTTTACGGTTCAGCGCTTCATTCACGGGGACTCGTGGTTGCCGGGTACTGGGGTCAAGTTCACTGCAGGCTTGACCAATTGA 1638 0.4969 MALVNALFILMMLLILPSSSKSFSDEIPSEIQTQDMQALIAQACMDIENQNSCLQNIHNELTKIGPPSPTSVLSAALRTTLNEAQGAIDNLTKFSTFSVSNREQIAIGDCKELVDFSVSELAWSLGEMRRIRAGDTSVQYEGNLEAWLSAALSNQDTCLEGFEGTDRRLESYISGSLTQVTQLISNVLSLYTQLHALPFRPPRNNTHKTSESLDLDSEFPEWMTEGDQELLRSKPHRSRADAVVALDGSGHYRTITEAVNAAPSHSNRRYVIYVKKGLYRENVDMKRKMTNIMLVGDGIGQTIITSNRNFMQGWTTFRTATVAVSGKGFIARDMSFRNTAGPVNHQAVALRVDSDQSAFYRCSIEGFQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRAPLPLQKVTVTAQGRKSPHQSTGFTIQDSFILATQPTYLGRPWKQYSRTVYINTYMSGMVQPRGWLEWFGDFALTTLWYGEYRNYGPGASLAGRVKWPGYHIMKDAATASYFTVQRFIHGDSWLPGTGVKFTAGLTN* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0328 545 SUPERFAMILY Pectin lyase-like 238 542 IPR011050 -
Lja1g0328 545 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Lja1g0328 545 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 194 IPR035513 -
Lja1g0328 545 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 195 IPR035513 -
Lja1g0328 545 CDD PMEI-like_4 58 194 - -
Lja1g0328 545 TIGRFAM PME_inhib: pectinesterase inhibitor domain 4 195 IPR006501 GO:0004857
Lja1g0328 545 Pfam Plant invertase/pectin methylesterase inhibitor 39 190 IPR006501 GO:0004857
Lja1g0328 545 Gene3D - 236 543 IPR012334 -
Lja1g0328 545 PANTHER PECTINESTERASE 11 543 - -
Lja1g0328 545 Pfam Pectinesterase 241 529 IPR000070 GO:0030599|GO:0042545
Lja1g0328 545 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 11 543 - -
Lja1g0328 545 SMART PMEI_2 35 190 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0328 Lja-Chr1 2883471 2886465 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0328 1 545 Carbohydrate Esterase AT3G05620 62.050 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0328 K01051 - gmx:100810565 946.036